Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01290 and BPUM_0720

See Amino acid alignment / Visit BSNT_01290 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:52
# Commandline: needle
#    -asequence dna-align/BSNT_01290___nagP.1.24716.seq
#    -bsequence dna-align/BPUM_0720___nagP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01290___nagP-BPUM_0720___nagP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01290___nagP-BPUM_0720___nagP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01290___nagP
# 2: BPUM_0720___nagP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity:     964/1443 (66.8%)
# Similarity:   964/1443 (66.8%)
# Gaps:         156/1443 (10.8%)
# Score: 2918.0
# 
#
#=======================================

BSNT_01290___      1 ATGC--------TTTCA-TTTTTACAAAAACTCGGGAAGTCATTTATGCT     41
                     ||||        ||||| |||.|.|||||.|||||.||.|||||||||||
BPUM_0720___n      1 ATGCAAATGGTGTTTCAGTTTCTTCAAAAGCTCGGCAAATCATTTATGCT     50

BSNT_01290___     42 CCCGATTGCGGTTCTGCCTGCGGTTGGAATTATCCTTGCGCTTGG-CAGA     90
                     .||.||.||.||.||.||.||.|..||||||||..|.||..|||| |.||
BPUM_0720___n     51 TCCAATCGCTGTGCTTCCAGCAGCAGGAATTATTTTGGCTATTGGACGGA    100

BSNT_01290___     91 GAGGATGTATTTAATATCCCGTTTGTCTAT-CAGGCGGGGACGGCGGTTT    139
                      |||||||||||.|||||||||||.|..|| || |||||.|...|..|||
BPUM_0720___n    101 -AGGATGTATTTGATATCCCGTTTATTCATGCA-GCGGGAAATTCCATTT    148

BSNT_01290___    140 TTGATCATCTGCCGCTT--ATTTTTGCGATCGGAATTGCCATCGGCATTT    187
                     ||||..|..||  ||||  ||||||||.||.||.||.||.|||||.|||.
BPUM_0720___n    149 TTGAAAACTTG--GCTTTGATTTTTGCAATGGGTATAGCGATCGGTATTG    196

BSNT_01290___    188 CAAAAGACAGCAATGGGGCCGCGGGTTTATCAGGGGCGATATCGTATCTG    237
                     ||||.||..||||.|||||.||||..||||||||.|||||..|.|||.|.
BPUM_0720___n    197 CAAAGGATGGCAACGGGGCAGCGGCATTATCAGGAGCGATTGCTTATTTT    246

BSNT_01290___    238 ATGCTTGA--CGCGGCTACAAAGACAATTGATAAAACAAATAACATGGCG    285
                     ||  ||.|  .||.|.|||||...|||||.||..|||.||.||.||||.|
BPUM_0720___n    247 AT--TTTATCAGCTGGTACAACATCAATTAATTCAACGAACAATATGGGG    294

BSNT_01290___    286 GTGTTTGGGGGAATTAT-TGCCGGTTTAATTGCCGGTTACACCTATAACC    334
                     .|.|||||.||.|||.| || |||..||.|.||.|||||....||.||.|
BPUM_0720___n    295 ATATTTGGCGGTATTTTATG-CGGCCTACTGGCAGGTTATGTGTACAATC    343

BSNT_01290___    335 GCTTCAAGGATACCAAGCTGCCTGAATATCTCGGATTTTTCAGTGGCAGA    384
                     |.||||||||||..||.||.||.|||||..|.||.||.||.||.||.|||
BPUM_0720___n    344 GATTCAAGGATAAAAAACTACCCGAATACTTAGGGTTCTTTAGCGGAAGA    393

BSNT_01290___    385 CGGCTTGTGCCGATTATAACAGCCATTATTACGATCATTTTAGCGGGCAT    434
                     ||||||||.||.|||||.||.||..||.|.||.||..|.|||||.|..||
BPUM_0720___n    394 CGGCTTGTTCCTATTATGACTGCACTTTTCACCATTTTATTAGCCGCTAT    443

BSNT_01290___    435 ATTCGGAGTCGTCTGGCCGCCGATTCAATCTTGTATCAACTCG-TTTGGA    483
                     .||||||.|.||.||||||||.||||||....|.||||| |.| ||.||.
BPUM_0720___n    444 TTTCGGATTTGTATGGCCGCCAATTCAAAGCGGGATCAA-TGGATTAGGG    492

BSNT_01290___    484 GAGTGGATGCTCGGGCTCGGCGGCATCGGG-GCAGGCATATTCGGCCTTT    532
                     ||.|||||..|..|.||.|| .|||.|||| |||||..||||.||..|.|
BPUM_0720___n    493 GAATGGATTTTAAGTCTTGG-TGCAACGGGTGCAGGGCTATTTGGTTTCT    541

BSNT_01290___    533 TCAACAGGCTGTTAATTCCGCTTGGCCTTCACCATGTACTGAACAA--TA    580
                     |.|||.|..||.|.|||||..|.||.|||||.||||||||||||||  ||
BPUM_0720___n    542 TTAACCGCTTGCTCATTCCATTAGGACTTCATCATGTACTGAACAACTTA    591

BSNT_01290___    581 TTTTCTGGTTCCAATTTGGAGAATATAACGGAGTGACAGGGGATCTGGCG    630
                     |||  |||||.|||||.||.||||..|.|||||..|||||||||.|.||.
BPUM_0720___n    592 TTT--TGGTTTCAATTCGGGGAATTCAGCGGAGCAACAGGGGATTTAGCA    639

BSNT_01290___    631 CGCTT-TTTCGCGAA---AGATCCGACAGCGGGCACATATATGACGGGAT    676
                     ||.|| |||    ||   ||||||.|..||.||....|.||||||.||.|
BPUM_0720___n    640 CGATTCTTT----AAAGGAGATCCTAGTGCAGGTGTCTTTATGACTGGGT    685

BSNT_01290___    677 TCTTCCCAATCATGATGTTCGGTCTTCCGGCGGCGTGTCTGGCTATGGTT    726
                     |.||||||.|.||||||||||||||.||.|||||.|||||.||.||||||
BPUM_0720___n    686 TTTTCCCAGTGATGATGTTCGGTCTGCCAGCGGCATGTCTAGCCATGGTT    735

BSNT_01290___    727 GTGACTGCGAAGCCGTCTAAA-CGGAAAGCGACGGCTGGGATGATGATTG    775
                     |||||.||.||.|| |..||| ||.|||||.||.|||||..|||||||||
BPUM_0720___n    736 GTGACAGCAAAACC-TGAAAAGCGAAAAGCAACCGCTGGTTTGATGATTG    784

BSNT_01290___    776 GGTTTGCTTTAACGGCGTTTATCACAGGGATTACGGAGCCGATTGAGTTT    825
                     ||.|.||..|.|||.|.|||||.|||||.||.||.||.||.|||||.||.
BPUM_0720___n    785 GGATGGCGCTGACGTCATTTATTACAGGAATCACTGAACCTATTGAATTC    834

BSNT_01290___    826 GCATTTATGTTTTTATCTCCGCTTTTATACGCTGTTCACGCGGTCTTAAC    875
                     .|.|||||||||||||||||.||.|||||.|.|||.||.||.||..|.||
BPUM_0720___n    835 TCCTTTATGTTTTTATCTCCACTCTTATATGGTGTCCATGCTGTGCTGAC    884

BSNT_01290___    876 CGGGTTATCTTTATTTATCGTCAACTGGC-TCGGCATCCGCTCA----GG    920
                     .||..||||..|.|||||.|| ||.|..| |.||.||    |||    ||
BPUM_0720___n    885 AGGTCTATCGCTCTTTATTGT-AAATATCATTGGGAT----TCATAGCGG    929

BSNT_01290___    921 CTTCTCTTTTTCAGCCGGAGCTATCGATTATGTGCTCAGCTATGGAATCG    970
                     ||||.|.||||||||.|||||.||.|||||..|..|.||.|.|||.||||
BPUM_0720___n    930 CTTCACCTTTTCAGCAGGAGCGATTGATTACATTTTAAGTTTTGGTATCG    979

BSNT_01290___    971 CGGAAAAACCGCTGCTTCTGCTT----TTG--GTAGGTATATGCTATGCA   1014
                     |..|||||||.||..|.||.|||    |||  || |.|.||||..||.| 
BPUM_0720___n    980 CCCAAAAACCACTTATGCTACTTGGAGTTGGCGT-GCTTTATGGCATTC-   1027

BSNT_01290___   1015 GCGGTATACTTTATCGTGTTTTATGTACTGATTAAGGCT-TTGAATTTAA   1063
                         |.||||||.|.||.||.|||.|.||.||||| .|| |||||..|.|
BPUM_0720___n   1028 ----TGTACTTTGTTGTTTTCTATTTCCTCATTAA-ACTGTTGAAGCTCA   1072

BSNT_01290___   1064 AAACGCCTGGACGGGAAGACGATGATGTGGATGAAGTGCTGGATGAAAAT   1113
                     ||||.||.|||.|.|||||.|||||..|               ||||.||
BPUM_0720___n   1073 AAACACCAGGAAGAGAAGATGATGAAAT---------------TGAAGAT   1107

BSNT_01290___   1114 ACTGTTCAG--GATGTAAATGAAAACA-----------TCATGCT--GAA   1148
                     |.||  |||  |||| |.|.|||.|||           | |||||  .|.
BPUM_0720___n   1108 ATTG--CAGCCGATG-ATACGAAGACAGAAGGTGCAAGT-ATGCTTCTAG   1153

BSNT_01290___   1149 AGGG-CTCGGCGGAAAAGAAAACCT-TCA-AACCATTGATCATTGCGCCA   1195
                     |||| ||.||.||.||||||||  | ||| .||.|||||||||||.||||
BPUM_0720___n   1154 AGGGACTTGGTGGCAAAGAAAA--TATCACGACGATTGATCATTGTGCCA   1201

BSNT_01290___   1196 CAAGGCTGCGACTGACTGT-GAAGGATACCGCTTTGGTGGATG-AAGCGC   1243
                     |..|.||.||..|.||.|| ||| |||||....||..|..||| |||..|
BPUM_0720___n   1202 CTCGTCTACGTTTAACAGTAGAA-GATACACAATTATTAAATGAAAGTAC   1250

BSNT_01290___   1244 TGCTAAAGAAAGCAGGCGCAAAAGGGGT--TG---TCAAATCGGGCGGGC   1288
                     | .|.||.||||||||.||.||||||||  ||   |||         ||.
BPUM_0720___n   1251 T-TTGAAAAAAGCAGGTGCCAAAGGGGTACTGACTTCA---------GGA   1290

BSNT_01290___   1289 AA----TCGGTTCAAGTCATTATTGGCCCGAATGTGGAATTT---GCAGC   1331
                     ||    ||.||.|||.||||.|||||..|||||||.||||||   ||||.
BPUM_0720___n   1291 AAAAACTCTGTACAAATCATCATTGGAACGAATGTAGAATTTGTCGCAGA   1340

BSNT_01290___   1332 TG---------AGGAATTGAGGGCTGCTGTCAAA------TAA   1359
                     ||         |||||            |||.||      |||
BPUM_0720___n   1341 TGATCTTCGCAAGGAA------------GTCGAACGAGATTAA   1371


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.