Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02061 and BPUM_0723

See Amino acid alignment / Visit BSNT_02061 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:32
# Commandline: needle
#    -asequence dna-align/BSNT_02061___yjgB.1.24716.seq
#    -bsequence dna-align/BPUM_0723___yjgB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02061___yjgB-BPUM_0723___yjgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02061___yjgB-BPUM_0723___yjgB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02061___yjgB
# 2: BPUM_0723___yjgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 684
# Identity:     355/684 (51.9%)
# Similarity:   355/684 (51.9%)
# Gaps:         204/684 (29.8%)
# Score: 774.0
# 
#
#=======================================

BSNT_02061___      1 ATGAAAAAGACAATGTCTGCTATTACCGCGGCGGCAGCAGTAACAAG-CT     49
                     |||||.||.||||   |.|||.||               ||  ||.| ||
BPUM_0723___y      1 ATGAAGAAAACAA---CCGCTTTT---------------GT--CATGACT     30

BSNT_02061___     50 GTTTTAC-CGGCTTTGGGGCTGCGTCC-------TT---TTCAGCACCGG     88
                     |.||.|| |         |||.|||||       ||   |||||| ||.|
BPUM_0723___y     31 GCTTCACTC---------GCTACGTCCGCCTTCATTGGATTCAGC-CCTG     70

BSNT_02061___     89 CAAAGGCCGCAGCTCAAACAAACACGCTCTCAGAAAACACGAATCAATCA    138
                     .|   |||.||||        |||.||          ||.||...|||||
BPUM_0723___y     71 TA---GCCCCAGC--------ACATGC----------CATGAGCAAATCA     99

BSNT_02061___    139 GCCGCCGAGC-------TTGTCA-------AAAACCTCTAT-AACACC--    171
                     ||.|.|||||       |..|||       |.||||.||.| ||||||  
BPUM_0723___y    100 GCAGTCGAGCAATCCGTTCCTCAAGGTCCGACAACCGCTTTAAACACCAT    149

BSNT_02061___    172 ----------GCCTATAAAGGGGAAATGCCTCAGCAGGCGCAAGGCCTTA    211
                               ||..|||||||..|||||||..|..|.||..|||||.|||
BPUM_0723___y    150 TTATGAGCTGGCACATAAAGGACAAATGCCGTATTATGCAAAAGGCTTTA    199

BSNT_02061___    212 CCATT--------AACAAAAGCACAAAAGGGGATGTCCACGCTGCGTT--    251
                     ..|||        |||||      |.||  |||||||||        |  
BPUM_0723___y    200 AAATTGGTGTTCAAACAA------AGAA--GGATGTCCA--------TCA    233

BSNT_02061___    252 -----TGGGGAA-------CCGGAAAGACCAGTCGGGGGAGACAA--TCG    287
                          |.||.||       ||.||||   |||        |.|||  |.|
BPUM_0723___y    234 TAAACTAGGAAATCCATATCCAGAAA---CAG--------GCCAAAGTAG    272

BSNT_02061___    288 CTTTGATTTATATCA--CTGGAATATGGGACAGCCGGGCTACGGATTTTC    335
                     |||||||||.|||||  |||  |.|||||..|.|||      ||||||.|
BPUM_0723___y    273 CTTTGATTTGTATCATGCTG--AAATGGGGAATCCG------GGATTTGC    314

BSNT_02061___    336 CTATCATAAAGACATG--------ACAATTTCAGAAATCCGCTACTTTGG    377
                     .|.||||.|.|  |||        |.||||...|||||.||.||.||.||
BPUM_0723___y    315 TTTTCATTATG--ATGCAAAAGGTAAAATTGATGAAATTCGTTATTTCGG    362

BSNT_02061___    378 AACCGGTGT-GGAACGGCAGCTGAATTTAGGCGGAGTTACGCCGGAAGTA    426
                     .||...||| |.||..|.|.| ||||.|.||||||.|.||.||.....||
BPUM_0723___y    363 CACAAATGTAGAAAAAGAAAC-GAATATCGGCGGAATGACCCCTTCCCTA    411

BSNT_02061___    427 CTGCAGAAGCAATTAGGACCAGCAAATCGGGT--GTTAACCGTCCCGTTT    474
                     ||..||||.|||.|.||||.|||..||...||  ||  |||.||||    
BPUM_0723___y    412 CTAAAGAAACAACTTGGACAAGCGGATTCAGTCAGT--ACCATCCC----    455

BSNT_02061___    475 ACCG----ATGAAATCGATTATGTATAT-GATACAGGCCACTATGAACTC    519
                     ||.|    |.||||...|.||.||.||| || ||.||..|.|||||.||.
BPUM_0723___y    456 ACAGACAAAAGAAAAAAAATACGTGTATCGA-ACTGGAGATTATGAGCTG    504

BSNT_02061___    520 CATTTTGTAATAGG--------CACGGATCAGACAGCCGA----------    551
                     .|.|||.|..|.||        ||...|||||.||||.||          
BPUM_0723___y    505 GAATTTATCGTCGGTCATGATCCAGATATCAGTCAGCAGAAGCTCACCGT    554

BSNT_02061___    552 ---CCATGTAAAC---CTAAAAGCAAA---ATAA    576
                        .|||.|.|||   .|.|||||..|   .|||
BPUM_0723___y    555 CTTGCATATTAACTTGGTGAAAGCTGATTCCTAA    588


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