Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01300 and BPUM_0728
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:53
# Commandline: needle
# -asequence dna-align/BSNT_01300___treP.1.24716.seq
# -bsequence dna-align/BPUM_0728___treP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01300___treP-BPUM_0728___treP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01300___treP-BPUM_0728___treP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01300___treP
# 2: BPUM_0728___treP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1474
# Identity: 1043/1474 (70.8%)
# Similarity: 1043/1474 (70.8%)
# Gaps: 98/1474 ( 6.6%)
# Score: 3568.0
#
#
#=======================================
BSNT_01300___ 1 ATGGGGGAACTGA-----ACAAATCGGCACGTCAGATTGTCGAAGCAGTC 45
|||| |||| |...|.|.|||..|||||||||..||||..||
BPUM_0728___t 1 ATGG-----CTGATTATCAGGCAGCAGCAGATCAGATTGTGAAAGCCATC 45
BSNT_01300___ 46 GGCGGTGCTGAAAATATTG---CAGCGGCAACTCATTGTGTTACACGTTT 92
|||||....|||||.|||| .|||| ||.||||||||.|||.|..|
BPUM_0728___t 46 GGCGGCAAAGAAAACATTGATCAAGCG---ACACATTGTGTGACAAGGCT 92
BSNT_01300___ 93 GCGTTTTGCTTTAATAGATGAAAGCAAGGTTGACCAAGAGA---TGCTTG 139
|||.||||...|.|..||||||.|.||||||| |.|||| ..||||
BPUM_0728___t 93 GCGCTTTGTGCTGAAGGATGAAGGAAAGGTTG---ATGAGAAAGCACTTG 139
BSNT_01300___ 140 ATCAAATTGATGCGGTAAAGGGATCATTCTCGACAAACGGACAGTTTCAG 189
|.|||||.||.|..||.||||||||.|||||..|.|||||.||.|..||.
BPUM_0728___t 140 AACAAATAGAAGAAGTGAAGGGATCTTTCTCAGCGAACGGTCAATACCAA 189
BSNT_01300___ 190 GTCGTAATCGGCC-AGGGAACTGTCAACAAAGTATATGCTGAACTGGTTA 238
||.||.||||||| ||||..| |||||....||||||||.|||.||||.|
BPUM_0728___t 190 GTGGTGATCGGCCAAGGGGTC-GTCAATCGGGTATATGCCGAAATGGTGA 238
BSNT_01300___ 239 AGGAAACGGGGATTGGCGAGTCAACAAAGGATGAAGTGAAGAAGGCCTCA 288
|..|.||.||||||||.||..|.|||||.||.||.||||||...|||||.
BPUM_0728___t 239 AACAGACAGGGATTGGTGAAGCCACAAAAGAGGACGTGAAGCGTGCCTCT 288
BSNT_01300___ 289 GA--AAAAAATATGAATCCTTTGCAGCGTACTGTGAAAACGCTTGCAGAC 336
|| |||||.|| |||||.|||||||||.||||||||||||||||.||.
BPUM_0728___t 289 GATCAAAAATTA--AATCCATTGCAGCGTGCTGTGAAAACGCTTGCGGAT 336
BSNT_01300___ 337 ATTTTTATTCCAATATTGCCTGCGATTGTCACGGCGGGTCTTTTAATGGG 386
|||||||||||.||..|.|||||.||.|||||.||.|||.|.||||||||
BPUM_0728___t 337 ATTTTTATTCCGATTCTTCCTGCCATCGTCACCGCCGGTTTATTAATGGG 386
BSNT_01300___ 387 GATCAATAACATTTTAACGGCGGAAGGCATTTTC-TTCAGCACAAAATCG 435
|||.|||||.|||.||||.||....|.||||||| ||.|.|| |||||||
BPUM_0728___t 387 GATTAATAATATTCTAACAGCTCCTGACATTTTCTTTGATCA-AAAATCG 435
BSNT_01300___ 436 ATTGTGCAGGTTTATCCGCAGTGGGCGGATCTTGCTAATATGATTAACCT 485
|||||..|.||.||||||...|||||.|||.|.||.||||||||.|||.|
BPUM_0728___t 436 ATTGTCGATGTGTATCCGGCTTGGGCTGATTTAGCGAATATGATCAACTT 485
BSNT_01300___ 486 GATTGCAGGCACGGCCTTTACGTTTTTGCCTGCGTTAATCGGATGGTCTG 535
||||||||||||.|||||.||.||..||||.||.||||||||.|||||.|
BPUM_0728___t 486 GATTGCAGGCACTGCCTTCACATTCCTGCCCGCATTAATCGGCTGGTCAG 535
BSNT_01300___ 536 CCGTCAAGCGGTTCGGCGGCAATCCGCTTCTCGGCATTGTGCTCGGAGTT 585
||||.||||||||.||.||.||||||||..|.||.||.||.||.||..|.
BPUM_0728___t 536 CCGTGAAGCGGTTTGGGGGAAATCCGCTCTTAGGGATGGTCCTTGGGCTG 585
BSNT_01300___ 586 ATGCTCGTGCATCCTGATTTGCTGAATGCGTGGGGATATGGCGCGGCAGA 635
||||||||.||.||.||.||..|.|||||||||||.||||||||||||||
BPUM_0728___t 586 ATGCTCGTACACCCAGACTTATTAAATGCGTGGGGCTATGGCGCGGCAGA 635
BSNT_01300___ 636 ACAAAG--CGGAGAGATCCCGGTATGGAATCTATTCGGCCTAGAGGTGCA 683
|||| |||.|||||.||.||.|||||..|.||.||.||.||.|||||
BPUM_0728___t 636 --AAAGTCCGGTGAGATTCCAGTCTGGAACTTGTTTGGACTTGAAGTGCA 683
BSNT_01300___ 684 GAAAGTCGGCTATCAGGGCCAGGTACTCCCAATTTTGCTTGCTTCTTATA 733
.||.||.||.|||||.||.|||||.||.||.||..|..|.||.||.|||.
BPUM_0728___t 684 AAAGGTAGGGTATCAAGGACAGGTTCTTCCGATACTCGTCGCCTCGTATT 733
BSNT_01300___ 734 TGCTGGCGAAGATTGAGGTATTTTTAACAAAACGCACACCTGAGGGCATA 783
|.||.||||||.|.||..|.|||.|.||||||||.||||||||..||||.
BPUM_0728___t 734 TACTAGCGAAGCTCGAATTGTTTATCACAAAACGGACACCTGAAAGCATT 783
BSNT_01300___ 784 CAGCTGCTCGTTGTCGCACCAATTACGCTTCTCTTAACAGGATTTGCCTC 833
|||||..|.||.||.||.||.|||||| |||..||...|||.||
BPUM_0728___t 784 CAGCTATTAGTGGTTGCTCCGATTACG------TTATTAGTCATTGGCT- 826
BSNT_01300___ 834 TTTTATCATT-------ATCGGCCCGATTACATTTGCGATCGGTAATGTA 876
|||||||.|| ||.||.||.||.||||||||.|||||.||.||.
BPUM_0728___t 827 TTTTATCCTTTATTGTCATTGGACCTATCACATTTGCAATCGGCAACGTG 876
BSNT_01300___ 877 CTGACTTCAGGGCTTATCTCGGTGTT----TGGTTCTTTTGCCGCACTGG 922
.|.||.||.||.|||.|..|.||.|| ..|||| ||.|||||.|
BPUM_0728___t 877 TTAACATCTGGACTTGTTGCTGTATTCCAGCAGTTC----GCAGCACTTG 922
BSNT_01300___ 923 GCGGTCTGTTATATGGCGGTTTCTACTCAGCGCTCGTGATTACCGGTATG 972
|.|||||.|||||.||||||||.||..|||||.|.||.|||||.||.|||
BPUM_0728___t 923 GTGGTCTATTATACGGCGGTTTGTATGCAGCGTTAGTCATTACTGGAATG 972
BSNT_01300___ 973 CATCACACGTTTCTTGCAGTCGACCTGCAGCTCATCGGTTCAAAGCTCGG 1022
|||||.|||||.||.||.||.||..|.||..|.||...||||||.||...
BPUM_0728___t 973 CATCATACGTTCCTCGCGGTTGATATTCAATTGATTAATTCAAAACTGCA 1022
BSNT_01300___ 1023 CGGCACCTTTTTATGGCCGATGCTGGCGCTTTCTAATATCGCACAAGGTT 1072
|||.||.|||.|||||||||||||.||.||.|||||||||||||||||.|
BPUM_0728___t 1023 CGGTACGTTTCTATGGCCGATGCTCGCACTGTCTAATATCGCACAAGGGT 1072
BSNT_01300___ 1073 CGGCCGCTCTAGCCATGATGTTTATCGTGAAGGATGAGAAACAAAAAGGC 1122
|.|||||.||.||.|||||||||.|..||||.|||||.||.|||||.||.
BPUM_0728___t 1073 CAGCCGCACTTGCGATGATGTTTGTTTTGAAAGATGAAAAGCAAAAGGGT 1122
BSNT_01300___ 1123 CTCTCCCTCACATCAGGGATTTCTGCTTATCTT-GGCATTACAGAGCCTG 1171
|||||.|||||||||.|.|||||.||||| ||| ||.|||||.|||||.|
BPUM_0728___t 1123 CTCTCGCTCACATCAAGTATTTCCGCTTA-CTTAGGAATTACCGAGCCAG 1171
BSNT_01300___ 1172 CCATCTTTGGGGTGAATCTGCGATACAGATTCCCGTTTATCATTGCAATG 1221
|.||.|||||.||.||..|.||.|||.|.|||||.|||||..||||..|.
BPUM_0728___t 1172 CGATGTTTGGTGTCAACTTACGCTACCGGTTCCCATTTATTTTTGCGCTT 1221
BSNT_01300___ 1222 GTCAGCTCTGGCCTGGCCGGAATGTATATTTCTTCTCAAGGTGTGCTGGC 1271
.|.||||||||..|.|||||.||||.|||..|.||||||||.||||||||
BPUM_0728___t 1222 ATTAGCTCTGGTTTAGCCGGTATGTTTATCGCCTCTCAAGGGGTGCTGGC 1271
BSNT_01300___ 1272 AAGCTCCGTCGGTGTCGGCGGCGTGCCGGGGATTTTCTCAATCATGAGCC 1321
||||||.||.|||||.||.|||.|.|||||.||.|||||.||.|| ||
BPUM_0728___t 1272 AAGCTCAGTTGGTGTTGGAGGCATTCCGGGAATCTTCTCTATTAT---CC 1318
BSNT_01300___ 1322 ---AGTACTGGGGCGCGTTTGCAATCGGGATGGCTATTGTATTGATCGTG 1368
|.||.||||||||.|||||.||.|||||||..|||||..|.|||||.
BPUM_0728___t 1319 CGAAATATTGGGGCGCATTTGCGATAGGGATGGTCATTGTCCTCATCGTC 1368
BSNT_01300___ 1369 CCGTTTGCCGGAACATACGC-----GTATGC-----------------GA 1396
||.||...|||||| | |||||| .|
BPUM_0728___t 1369 CCATTCATCGGAAC-----CCTTTTGTATGCAAAGCTGAAAAAGAAGAAA 1413
BSNT_01300___ 1397 GAT---TCA----AACATAAATAA 1413
||| ||| |||.|||.||.
BPUM_0728___t 1414 GATGTATCACAAGAACTTAACTAG 1437
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