Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01313 and BPUM_0733

See Amino acid alignment / Visit BSNT_01313 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:54
# Commandline: needle
#    -asequence dna-align/BSNT_01313___yfkM.1.24716.seq
#    -bsequence dna-align/BPUM_0733___yfkM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01313___yfkM-BPUM_0733___yfkM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01313___yfkM-BPUM_0733___yfkM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01313___yfkM
# 2: BPUM_0733___yfkM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 525
# Identity:     399/525 (76.0%)
# Similarity:   399/525 (76.0%)
# Gaps:          12/525 ( 2.3%)
# Score: 1466.5
# 
#
#=======================================

BSNT_01313___      1 ATGGGGAAAAAAATTGCAGTTGTTTTAACAGATTATTTTGAGGACAGCGA     50
                     |||||.||.||||||||||||||.|||||||||||.||||||||....||
BPUM_0733___y      1 ATGGGTAAGAAAATTGCAGTTGTATTAACAGATTACTTTGAGGATGTTGA     50

BSNT_01313___     51 GTACACTGAGCCTGCGAAAGCCTTTAAAGAAGCGGGACATGAACTGACTG    100
                     .|.|||.||||||||.||||||||||||||.||.||.||.||..|.||.|
BPUM_0733___y     51 ATTCACCGAGCCTGCAAAAGCCTTTAAAGATGCAGGCCACGAGATCACAG    100

BSNT_01313___    101 TCATCGAAAAAGAAAAAGGAAAAACAGTAAAAGGCAAGCAGGGAAAAGCG    150
                     ||||.|||||.||||||||.||||||||.|||||.|||||.|||.|.||.
BPUM_0733___y    101 TCATTGAAAATGAAAAAGGTAAAACAGTGAAAGGGAAGCAAGGAGAGGCA    150

BSNT_01313___    151 GAAGTGACGGTTGACGCGTCCATTGACGACGTAAACCCTTCAGACTTTGA    200
                     |||||.|..||.||.|||||.||||||.|||||||.|||..||||||.||
BPUM_0733___y    151 GAAGTAAGAGTGGATGCGTCTATTGACAACGTAAAGCCTGAAGACTTCGA    200

BSNT_01313___    201 TGCGCTTTTGATTCCCGGAGGATTTTCACCAGACCAGCTTCGCGCTGACG    250
                     |||.|||.|.|||||.||.||.||.||||||||....||.||.||.||.|
BPUM_0733___y    201 TGCACTTCTCATTCCTGGCGGTTTCTCACCAGATATTCTGCGTGCAGATG    250

BSNT_01313___    251 ATCGTTTCGTCCAATTTACAAAAGCGTTTATGACTGACAAAAAACCGGTA    300
                     ||||||.|||||||||.||.|||||.||||||..|||.||||||||.|||
BPUM_0733___y    251 ATCGTTACGTCCAATTCACTAAAGCATTTATGGATGAGAAAAAACCAGTA    300

BSNT_01313___    301 TTCGCCATTTGCCACGGCCCGCA---GCT-TTTAATCAATGCGAAAGCGC    346
                     ||.||.||.||.|||||.|||||   ||| .|||  ||  ||.|||.|||
BPUM_0733___y    301 TTTGCGATCTGTCACGGACCGCAATTGCTCATTA--CA--GCAAAAACGC    346

BSNT_01313___    347 TCGACGGCCGAAAAGCGACGGGCTATACGTCCATTCGTGTTGACATGGAA    396
                     |.||.||..||...|||||.||||||||.|||||....|||||.||||||
BPUM_0733___y    347 TTGAAGGAAGAGGCGCGACTGGCTATACATCCATCAAAGTTGATATGGAA    396

BSNT_01313___    397 AACGCCGGTGCCGACGTTGT--GGACAAGGAAGTGGTTGTTTGCCAGGAT    444
                     |||||.||.| |.||.|| |  .|||.|.|||||.||.|||||.||||||
BPUM_0733___y    397 AACGCAGGCG-CTACATT-TAAAGACGAAGAAGTCGTCGTTTGTCAGGAT    444

BSNT_01313___    445 CAATTGGTCACTAGCCGCACACCGGAAGATATACCGGCATTTAACCGCGA    494
                     ||..|.||.||.|||||.|||||.||.||.||.||.||.||||||||.||
BPUM_0733___y    445 CAGCTTGTGACAAGCCGTACACCTGATGACATTCCAGCCTTTAACCGTGA    494

BSNT_01313___    495 GTCATTGGCATTGCTTGAGAAATAA    519
                     .|||||...|.|||||||.||||||
BPUM_0733___y    495 ATCATTAAAACTGCTTGAAAAATAA    519


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