Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01337 and BPUM_0752
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:56
# Commandline: needle
# -asequence dna-align/BSNT_01337___yfjP.1.24716.seq
# -bsequence dna-align/BPUM_0752___alkA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01337___yfjP-BPUM_0752___alkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01337___yfjP-BPUM_0752___alkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01337___yfjP
# 2: BPUM_0752___alkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1090
# Identity: 574/1090 (52.7%)
# Similarity: 574/1090 (52.7%)
# Gaps: 314/1090 (28.8%)
# Score: 1555.0
#
#
#=======================================
BSNT_01337___ 0 -------------------------------------------------- 0
BPUM_0752___a 1 ATGACCGGAAATAAGGAAGATATAACTGATAAATTCTTGTACTCTTTACG 50
BSNT_01337___ 0 -------------------------------------------------- 0
BPUM_0752___a 51 TTTGAAAGTATTCAATATAGAGAATCATTCATGCAAAGTGAAACAATCGC 100
BSNT_01337___ 1 --------------------------------ATGTGGAAGGAAAAAGTA 18
||||| |||||||| |
BPUM_0752___a 101 ATCTGCGTGTTTGCAGAAAGGAAGAAGAAAATATGTG---GGAAAAAG-A 146
BSNT_01337___ 19 TCTGTCACG-----CCTCCGTATCATTTTGACCGCGTGCTGGACAGGCTG 63
.|||.| || ||.||.|||||.|||||.|..||||| |.|
BPUM_0752___a 147 ACTGAC-CGTTGAACCGCCATATCACTTTGATCAAGTGCT-------CCG 188
BSNT_01337___ 64 TC-TTTA------GACCCCCTCAATGCTGTTGATCGAGAGGCAAGGGAAG 106
|| .||| ||.||..|.||.||.||.|||..|.|...|||.||..
BPUM_0752___a 189 TCGCTTATCAAGTGATCCATTAAAAGCAGTCGATTTAAATAAAAGAGAGA 238
BSNT_01337___ 107 TCCGTGTGCCAATCAG----------AAATCAAGCGGGGGACGTATGTAT 146
||...||.||.||||| |||.||..|| |
BPUM_0752___a 239 TCAAAGTACCCATCAGATTAGAACAAAAACCATACG-------------T 275
BSNT_01337___ 147 TGTAAAGGTACAAGCGTTAGGACATGCGG----------GCGATCCTGAG 186
|||....||.||||| || .||| ||| ||...|
BPUM_0752___a 276 TGTCGTCGTTCAAGC-------CA-CCGGAACAAAAGAAGCG--CCCACG 315
BSNT_01337___ 187 TTCCTCGTCAGCGGGGAAACGGATCAGGGAGAAA---------TGATGAA 227
|| |||...||..|||||||| |...|||.|| || |||.
BPUM_0752___a 316 TT--TCGGGTGCAAGGAAACGG--CCCTGAGGAACCTCTCATCTG-TGAG 360
BSNT_01337___ 228 GGAAATCAAGCGGATTTTT--CAATGGGAAAATCATTTGCAGCAC---GT 272
|.||| || |||||||| || .|||..||||.|| || || ||
BPUM_0752___a 361 GTAAA--AA--GGATTTTTGGCA--TGGAGCATCAATT--AG-ACGCTGT 401
BSNT_01337___ 273 TCTGGATCATTTTTCAAAAACGAGCCT---GTCCGCTATTTTTGAA-GAG 318
.|.|||.||||||||..||||.|..|| .|||| |||||||| ||
BPUM_0752___a 402 GCAGGAGCATTTTTCTGAAACCAATCTAGCATCCG---TTTTTGAACGA- 447
BSNT_01337___ 319 CATGCCGGGACGCCGCTTGTTCTGGA-CTACAGCGTGTACAACTGCATGA 367
|||...|||||.||||||.|.||.|| .|.|| |.|.||..|.|||.|||
BPUM_0752___a 448 CATAAGGGGACACCGCTTATGCTAGATTTTCA-CTTATATCATTGCTTGA 496
BSNT_01337___ 368 TGAAATGCATTATCCACCAGCAGCTCAATCTTTCCTTCGCTTACACGCTA 417
||||||||||.||.||.||||||||||||||.||.||.||.||....||.
BPUM_0752___a 497 TGAAATGCATCATTCATCAGCAGCTCAATCTGTCGTTTGCGTATGAACTC 546
BSNT_01337___ 418 ACAGAACGGTTTGTTCATGCGTTTGGCGAGCAGAAGGATGGCGTGTGGTG 467
||..||||||||||||||.|||..||||||||.|..|||||.||.||||.
BPUM_0752___a 547 ACGAAACGGTTTGTTCATACGTACGGCGAGCAAATAGATGGGGTTTGGTT 596
BSNT_01337___ 468 CTACCCAAAGCCGGAAACGATTGCAGAACTCGATTATC--AGGATCTGCG 515
|.|.||....||.|||||.||.||...|||.|| |.| ||||..||.|
BPUM_0752___a 597 CGATCCTTTACCAGAAACCATCGCCTCACTTGA--AACAGAGGAATTGAG 644
BSNT_01337___ 516 TGATCTGCAATTCAG-CATGAGAAAAGCGGAATACACCATTGATACATCA 564
..|.||.|||||.|| || |.|.||||||||.|||..|||.|||...|||
BPUM_0752___a 645 AAAGCTCCAATTTAGTCA-GCGGAAAGCGGAGTACGTCATCGATGTCTCA 693
BSNT_01337___ 565 AGGATGATCGCAGAAGGCACACTCAGC---TTGTCAGAGCTGC-CGCATA 610
| ||| |||| ||||.|| |.| |.
BPUM_0752___a 694 A-----------------------AGCGAATTGT--GAGCGGCTCTC-TT 717
BSNT_01337___ 611 TGGCGGATGAAGAC--ATT--ATGAAGAAACTGATCAA------------ 644
|| |..|||| ||| |.|||..||||||||.|
BPUM_0752___a 718 TG-----TTTAGACGAATTACACGAATTAACTGATCTAGAGGTGGAAGAA 762
BSNT_01337___ 645 -----------AATTAGGGGTATCGGCCCGTGGACCGTGCAAAATATCCT 683
.|||||.||.||.||.||.|||||.||.||||||.|.||
BPUM_0752___a 763 CGCCTGCTTCCGATTAGAGGGATTGGGCCTTGGACAGTTCAAAATGTGCT 812
BSNT_01337___ 684 CATGTTCGGACTTGGCCGTCCCAATTTATTCCCGCTTGCCGATATCGGCC 733
||||...||||||||..|.||.|||.|.||.|||.|.||.||||||||..
BPUM_0752___a 813 CATGAATGGACTTGGAAGACCAAATCTCTTTCCGATGGCAGATATCGGGA 862
BSNT_01337___ 734 TCCAGAATGCCATCAAACGCCATTTTCAGCTGGACGATAAGCCGGCAAAG 783
|.||.||.||||||||.||.||||||.|.|||...||.||||||.||||.
BPUM_0752___a 863 TTCAAAACGCCATCAAGCGGCATTTTGACCTGCCTGAAAAGCCGACAAAA 912
BSNT_01337___ 784 GATGTCATGCTGGCGATGAGCAAGGAGTGGGAGCCTTATTTAAGCTATGC 833
||.|..|||...||..|.||.|||||.|||..|||||||||||||||.||
BPUM_0752___a 913 GAAGAGATGGCAGCATTAAGTAAGGATTGGACGCCTTATTTAAGCTACGC 962
BSNT_01337___ 834 GTCTTTGTATTTGTGGAGAAGTATAGA-----ATAA---- 864
.|||||.|||||.||||||||.||.|| ||||
BPUM_0752___a 963 ATCTTTATATTTATGGAGAAGCATTGAAACAGATAAATGA 1002
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