Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05743 and BPUM_0761

See Amino acid alignment / Visit BSNT_05743 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_05743___thrZ.1.24716.seq
#    -bsequence dna-align/BPUM_0761___thrZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05743___thrZ-BPUM_0761___thrZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05743___thrZ-BPUM_0761___thrZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05743___thrZ
# 2: BPUM_0761___thrZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2033
# Identity:    1364/2033 (67.1%)
# Similarity:  1364/2033 (67.1%)
# Gaps:         217/2033 (10.7%)
# Score: 4319.0
# 
#
#=======================================

BSNT_05743___      1 ---------AT--GAGTAAACAT-GTACACATTCAGCTTCCGGACGGACA     38
                              ||  |||.|||.|| ||..|.|||||..||||.||.|||.|
BPUM_0761___t      1 GTGTCAGTCATGAGAGAAAAAATGGTGAAGATTCAATTTCCAGATGGAAA     50

BSNT_05743___     39 GATCAAGGAATATC-CGAAAGGCATCACAATCAAAGAAGCGGCTGGTTCT     87
                     |||.|||||.| || |...|||.|..||..||..|||.|..||....|.|
BPUM_0761___t     51 GATAAAGGAGT-TCTCTGCAGGTACGACTGTCGCAGATGTTGCCTCCTAT     99

BSNT_05743___     88 ATCAGTTCCAGTCTGCAA--AAGAAGGCGGCTGCAGGTCAGGTCAATG-G    134
                     ||.||..|.||..|  ||  |||||.||.|..|||||..||.|||||| .
BPUM_0761___t    100 ATTAGCCCAAGCTT--AAGGAAGAAAGCAGTGGCAGGAAAGATCAATGAA    147

BSNT_05743___    135 CAAGCTTGTTGATCTCAGTTTCA--AGCTGGAGGAG-GATGCTGAGCTTT    181
                     ||| .|.||.|||.||||  |||  ||||||| .|| |||.||..|||.|
BPUM_0761___t    148 CAA-ATGGTCGATGTCAG--TCATCAGCTGGA-AAGCGATACTCGGCTGT    193

BSNT_05743___    182 CGATTGTTACACTCGATTCACAAGAA-GGCTTGCAGGTGCTTCGCCACAC    230
                     |.|||||.||||||||||||.||||| |||||| |.|||||.||.||.||
BPUM_0761___t    194 CTATTGTCACACTCGATTCAAAAGAAGGGCTTG-AAGTGCTACGTCATAC    242

BSNT_05743___    231 ATCAGCGCATGTGCTGGCCCAAGCAGTAAAACGGCTGTACGGCGAAGTGT    280
                     |||.||.||.||..|.||||||||.||.|||.||.|.||||||.|.||..
BPUM_0761___t    243 ATCTGCACACGTATTAGCCCAAGCTGTGAAAAGGTTATACGGCAATGTCA    292

BSNT_05743___    281 CATTGGGGGTAGGGCCTGTGATTGAAGACGGCTTCTACTATGACATGAAG    330
                     ||.|.||..|.||||||||.||||||.|.||.||.|||||||||||||||
BPUM_0761___t    293 CACTTGGAATCGGGCCTGTTATTGAAAATGGATTTTACTATGACATGAAG    342

BSNT_05743___    331 CTGGGGAAAAGCTTGGCATCAGGAGACTTAGAG---------GCCATCGA    371
                     |||....|||      |||.|.|.|   |||||         ||.||.||
BPUM_0761___t    343 CTGAATCAAA------CATTAAGTG---TAGAGGATTTGGCTGCAATTGA    383

BSNT_05743___    372 AAAAGAAATGAAAAACATAATAAATGAGAACCTTGAAATCAAACGTATAG    421
                     ||||||||||.|||||||.||.||.|||||.|.|...|||.||.|.|..|
BPUM_0761___t    384 AAAAGAAATGGAAAACATCATCAACGAGAATCATCTTATCCAAAGAAAGG    433

BSNT_05743___    422 AGGTTTCTTACGAAGAAGCTGATGAGCTGTTTGCACAAAAAGACGAGC-G    470
                     ||.||||.|||.||||||||||...|.|||||            |||| .
BPUM_0761___t    434 AGATTTCCTACAAAGAAGCTGAATCGATGTTT------------GAGCAT    471

BSNT_05743___    471 GCTC-----AAGCTTGAGATTTTAAAGGATATTCCGCGCGGGGAGGATAT    515
                     |.||     |||||.||.||||||||...|.|.||....|..||.|..||
BPUM_0761___t    472 GATCCATATAAGCTGGATATTTTAAATCGTCTCCCATCTGAAGAAGCCAT    521

BSNT_05743___    516 CACACTGTACCAGCAAGGGGAATTCGTTGACCTGTGCCGCGGGCCGCATC    565
                     ||||.||||.||||||||.|||||..|.||..|.|||||||||||.|||.
BPUM_0761___t    522 CACAGTGTATCAGCAAGGTGAATTTATCGATTTATGCCGCGGGCCTCATT    571

BSNT_05743___    566 TTCCTTCTACAGGGATGATCAAGGCGTTCAAACTGACAAGAGTATCAGGC    615
                     |.||||||||.||..|..|.|||.|.||.||.||.|||.|.||..||||.
BPUM_0761___t    572 TACCTTCTACTGGATTCGTAAAGTCATTTAAGCTAACACGTGTGGCAGGG    621

BSNT_05743___    616 GCTTATTGGCGCGG----AGACAGCAAAAATGAAGTCCTGCAGCGGGTGT    661
                     |||||||||||.||    ||.||||||    ||.||..|||||||.||||
BPUM_0761___t    622 GCTTATTGGCGGGGTGATAGTCAGCAA----GATGTATTGCAGCGAGTGT    667

BSNT_05743___    662 ACGGGGTTGCGTTTCAAAAGAAAAAAGATTTGGATGCGCACCTGCATATG    711
                     |.||.||.|||||||||.|...||||.|..|.|..|.|.|.||.|||.|.
BPUM_0761___t    668 ATGGTGTCGCGTTTCAACATCCAAAACAACTAGCCGAGTATCTTCATTTC    717

BSNT_05743___    712 CTGGAAGAAGC-GGCAAAACGAGACCATCGCAAGCTCGGCAAACAGTTAG    760
                     .|||||||||| .|| |||||.||.||.||.||..|.||.|||||.|||.
BPUM_0761___t    718 ATGGAAGAAGCAAGC-AAACGTGATCACCGAAAATTAGGGAAACAATTAT    766

BSNT_05743___    761 GGCTGTTTATGTTTTCTGAAGAAGCGCCGGGGATGCCGTTTTATTTGCCG    810
                     ..|||||.||||||||.|||||||||||.||.||||||||||||||.||.
BPUM_0761___t    767 CTCTGTTCATGTTTTCAGAAGAAGCGCCAGGTATGCCGTTTTATTTACCA    816

BSNT_05743___    811 AAAGGGCAGATTGTCCGCAATGAGCTGGAACG--CTTCTCGCGTGAACTG    858
                     |||.|.||||||||..|.|||||..|  ||.|  |||.||..|.|||.|.
BPUM_0761___t    817 AAAAGTCAGATTGTGAGAAATGAATT--AATGGCCTTTTCAAGAGAAGTT    864

BSNT_05743___    859 C-AAACAAATGCCGGC--TACAATGAGGTGCGTACGCCGTTTATGATGAA    905
                     | ||.|||| ||  ||  ||..|.||.|||.|.||.||||||||||||||
BPUM_0761___t    865 CGAAGCAAA-GC--GCAATATGAAGAAGTGAGCACACCGTTTATGATGAA    911

BSNT_05743___    906 TCAGCGGTTATGGGAGCAGTCAGGCCATTGGGACCATTATCGCGACAATA    955
                     .||...|.|||||||..|||||||.||.|||||.|||||||..||.||||
BPUM_0761___t    912 CCAAGAGCTATGGGAAAAGTCAGGTCACTGGGATCATTATCATGAAAATA    961

BSNT_05743___    956 TGTACTTTTCAGAAGTGGATGATACAAGATTCGCAATGAAGCCGATGAAT   1005
                     ||||.||.||||||||.|||.|||||||.||.||..|.||.||||||||.
BPUM_0761___t    962 TGTATTTCTCAGAAGTTGATCATACAAGCTTTGCTTTAAAACCGATGAAC   1011

BSNT_05743___   1006 TGCCCCGGCCACATGCTCATCTTTAAAAACAGCCTGTATTCTTATCGGGA   1055
                     ||.||.||.||.||||||||.||||||||||||.|.|.|||.|||.|.||
BPUM_0761___t   1012 TGTCCAGGACATATGCTCATGTTTAAAAACAGCTTATTTTCATATAGAGA   1061

BSNT_05743___   1056 TCTGCCGATTCGCATGGCGGAATTCGGACAGGTGCATCGCCATGAATACA   1105
                     .||.|||||..|.|||||.||.||.||.|||||||||||.|||||||..|
BPUM_0761___t   1062 CCTTCCGATCAGAATGGCTGAGTTTGGTCAGGTGCATCGTCATGAATTTA   1111

BSNT_05743___   1106 GCGGCGCTTTAAACGGAATGCTTC-GCGTTCGGACGTTCTGTCAGGATGA   1154
                     |||||||.|||||.|||.|| ||| |.||..|.||.||.||.||.|||||
BPUM_0761___t   1112 GCGGCGCATTAAATGGATTG-TTCAGGGTCAGAACATTTTGCCAAGATGA   1160

BSNT_05743___   1155 CGCCCATATTTTCGTTCGGGAG--GATCAGATTGAGAG-TGAGATCAAAG   1201
                     .|||||||||||  ||.|.|||  |||||.||||| || |||.|||||| 
BPUM_0761___t   1161 TGCCCATATTTT--TTTGAGAGAAGATCAAATTGA-AGCTGAAATCAAA-   1206

BSNT_05743___   1202 AAGCG---------ATTCGGCTGATTGATGAGGTATATCGGACATTTGGT   1242
                        ||         |||.|     |||||.|.||.||||||||||||||.
BPUM_0761___t   1207 ---CGGATTTTCCAATTAG-----TTGATCATGTGTATCGGACATTTGGG   1248

BSNT_05743___   1243 TTCGAGTATTCAGTTGAGCTTTCGACTCGCCCGGAGGATTCATTAGGCAA   1292
                     ||.|||||.||.||.||.||.||.|||||.||.||..|..|.|||||..|
BPUM_0761___t   1249 TTTGAGTACTCTGTGGAACTATCTACTCGTCCAGAAAAGGCGTTAGGGGA   1298

BSNT_05743___   1293 TGACAGCC-TTTGGGAAGCGTCGGAACGTGCCTTAGCAC------GCGTC   1335
                     ||| .||| |||||||....||.|||      |.|||||      ..||.
BPUM_0761___t   1299 TGA-TGCCATTTGGGATATTTCTGAA------TCAGCACTAAAGAATGTG   1341

BSNT_05743___   1336 CTTGAGGAGCTTGGC-----CTCTCTTATGAGATCAATGAAGGCGATGGG   1380
                     |||||     |.|||     .||..||||.||.|.||||||||.||||||
BPUM_0761___t   1342 CTTGA-----TCGGCTAAAGGTCGATTATCAGCTAAATGAAGGAGATGGG   1386

BSNT_05743___   1381 GCGTTTTACGGGCCGAAAATTGATTTCCACATAAAAGATGCCCTGAAACG   1430
                     ||.|||||.||.|||||.||.|||||.||.||.|||||.|||.||.|.||
BPUM_0761___t   1387 GCATTTTATGGCCCGAAGATCGATTTTCATATTAAAGACGCCTTGCAGCG   1436

BSNT_05743___   1431 GAGCCACCAATGCGCGACTATTCAGCTTGATTTTCAAATGCCGGAAAAAT   1480
                     .|||||.||.|||||.||.||.|||||.||||||||||||||.||.||||
BPUM_0761___t   1437 TAGCCATCAGTGCGCCACAATCCAGCTAGATTTTCAAATGCCTGAGAAAT   1486

BSNT_05743___   1481 TTGATTTAACATATATCAACGAACACAATGAAAAGGTTCGTCCCGTTGTC   1530
                     |||||||||||||||||||.|||.|.|||||||||||.||.||.|||||.
BPUM_0761___t   1487 TTGATTTAACATATATCAATGAAAAGAATGAAAAGGTACGGCCTGTTGTG   1536

BSNT_05743___   1531 ATCCACAGAGCGGTTTTCGGCTCAATCGACCGTTTCTTCGGCATTTTGAT   1580
                     ||.|||||.||..|||||||.||..|.||.||||||.|.||||||.|.||
BPUM_0761___t   1537 ATTCACAGTGCCATTTTCGGTTCTCTTGATCGTTTCCTTGGCATTCTCAT   1586

BSNT_05743___   1581 CGAGCATTACGGCGGGGCTTTTCCAGTCTGGCTCGCACCGCTCCAGGTTC   1630
                     .|||||||.||..||.||.||.||..|.|||||.|||||..|.||.||.|
BPUM_0761___t   1587 TGAGCATTTCGCTGGCGCCTTCCCGTTATGGCTGGCACCAGTGCAAGTAC   1636

BSNT_05743___   1631 AAATCATACCGGTTTCTCACGTTCACTTAGACTATTGCAGAAAGGTGCAG   1680
                     |||||||.||.||.||..|..|||||.|.||..|||||....||||||| 
BPUM_0761___t   1637 AAATCATTCCTGTCTCAAAGATTCACCTTGATCATTGCCTCGAGGTGCA-   1685

BSNT_05743___   1681 GCGGAGC--TGAAGCAGG--CGGGGATAAGAGCCGGCATTGATGAGCGCA   1726
                       |.|||  |.|||.|.|  | ||.||.||||.|...||.|||||.||..
BPUM_0761___t   1686 --GCAGCAATTAAGAAAGATC-GGCATCAGAGTCACAATCGATGAACGGG   1732

BSNT_05743___   1727 ATGAGAAGCTGGGCTATAAAATCAGAGAATCGCAGGTGCAGAAAATCCCG   1776
                     ||||.|||||.|||||||||||.||||||.|.||..||||.||||||||.
BPUM_0761___t   1733 ATGAAAAGCTCGGCTATAAAATGAGAGAAGCACAAATGCAAAAAATCCCT   1782

BSNT_05743___   1777 TACGT-GCTGGTGCTTGGAGAT-------------------CA-TGAGGA   1805
                     ||..| ||| ||..||||.|||                   || |||..|
BPUM_0761___t   1783 TATATCGCT-GTCATTGGCGATACAGAAATGCAAGAAAAAACACTGAATA   1831

BSNT_05743___   1806 GCAG-GAGAATGCGGTAAACGTCCGCCGA-TTCGGACATCAGCAG---AG   1850
                     .||| .||.|||..|.|||        || |||  |.|.||||.|   |.
BPUM_0761___t   1832 TCAGACAGCATGGAGAAAA--------GACTTC--AAACCAGCTGTCTAT   1871

BSNT_05743___   1851 TGAACACGTTC------------CTTTCCAAACTTTTAAAGATA-AAC--   1885
                     |||..||.|||            ||...||||   |.||||||| |||  
BPUM_0761___t   1872 TGATGACTTTCAACACATGGCGGCTCAACAAA---TAAAAGATAGAACAG   1918

BSNT_05743___   1886 TTG-TCAAACAGGTGGAAAATCGAGGCATGTAG   1917
                     ||| |||||.|.|.                   
BPUM_0761___t   1919 TTGCTCAAATATGA-------------------   1932


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