Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00576 and BPUM_0777
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:23
# Commandline: needle
# -asequence dna-align/BSNT_00576___ycgT.1.24716.seq
# -bsequence dna-align/BPUM_0777___ycgT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00576___ycgT-BPUM_0777___ycgT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00576___ycgT-BPUM_0777___ycgT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00576___ycgT
# 2: BPUM_0777___ycgT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity: 658/1156 (56.9%)
# Similarity: 658/1156 (56.9%)
# Gaps: 260/1156 (22.5%)
# Score: 1601.0
#
#
#=======================================
BSNT_00576___ 1 ATGGCTGAGAATCAA---GAGGTATATGACGTTACGATTATAGGCGGGGG 47
|||.| |||| ||| ||..|.|.||||||.||.|||||.|||||.||
BPUM_0777___y 1 ATGAC--AGAA-CAACTTGAATTGTTTGACGTCACCATTATTGGCGGCGG 47
BSNT_00576___ 48 GCCGATTGGGC-TGTTTACTGCTTTTTACTGCGGGATGCGGGAGCTGAAA 96
.|| |...||| |||..|||||.|||||..|.|||||||||||..|.||.
BPUM_0777___y 48 TCC-AGCAGGCATGTACACTGCCTTTTATAGTGGGATGCGGGATTTAAAG 96
BSNT_00576___ 97 ACAAAGGTAATCGAAT-TTTTGCCGAAG-CTCGGAGGGAAGGTGTCTTTA 144
||.||||||.|.||.| |..|| .||| ||.||.|||||..| ..||
BPUM_0777___y 97 ACGAAGGTACTGGAGTATAATG--AAAGCCTTGGCGGGAAAAT---CCTA 141
BSNT_00576___ 145 TTCTTTCCTGAGAAAATCATTCGCGATATCGGCGGCATACCG-------G 187
.|.|.||||||.|||.|||||.|.|||.|.|||||..|.||| |
BPUM_0777___y 142 CTGTATCCTGAAAAAGTCATTTGGGATGTAGGCGGTTTGCCGCCAACAAG 191
BSNT_00576___ 188 GGATTGCGGGAAAGCAGCTGATCGAGCAGCTGAAGGAGCAGGCGGCAACA 237
.| ||| |.|||.||||..||||||||.|..||||||||..||||
BPUM_0777___y 192 AG---GCG----AACAGTTGATTCAGCAGCTGGAAAAGCAGGCGAAAACA 234
BSNT_00576___ 238 TTTGATCCTGATATCGTATTGAATC-----AGCGTGTGACCGGGTTTGAA 282
|||||.||.||.||||.|.|||||| |.|..||.| ||.|||
BPUM_0777___y 235 TTTGAACCAGAGATCGCACTGAATCAAAAAATCACGTCA-----TTCGAA 279
BSNT_00576___ 283 CGCCTGGATGAAGGC-----ACCATTGTACTGACGGGTTCTGAA---GGG 324
|| .|||||| | |.||||.|.||||||| ||||| ||.
BPUM_0777___y 280 CG---TGATGAA--CATCAGAACATTTTGCTGACGG---CTGAAAATGGT 321
BSNT_00576___ 325 GAAAAGCACTATAC-AAGAACTGTAATTTTGGCTTGCGGCATGGGT-ACG 372
||....||.|..|| ||| ||..|.|||||.|| .|||||| |||
BPUM_0777___y 322 GATCGCCATTTGACGAAG-ACCCTCATTTTAGC------GATGGGTCACG 364
BSNT_00576___ 373 ------CTTGAGGTCAATG----AGTTTGACAGCGAGGATGCGGCCCGAT 412
|| |||.| | |..||||.|..|||.||||.|.|||.|
BPUM_0777___y 365 GCATCCCT----GTCCA-GCGGAAACTTGAAATTGAGCATGCAGACCGTT 409
BSNT_00576___ 413 ATGCGGGCAAAAATCTTCATTATGGAGTGGAGAAGCTCGATGCGTTTAAA 462
|||..|..|.|||.|||.||||...||||.||.||||..|..|.|||..|
BPUM_0777___y 410 ATGAAGTGACAAACCTTTATTACACAGTGCAGGAGCTTAAGACATTTGCA 459
BSNT_00576___ 463 GGGAAGCGCGTGGTGATATCAGGCGGCGGTGATACTGCGGTCGATTGGGC 512
||.||.||.|||||.||.|||||.|||||.||..|.|||||.||.|||||
BPUM_0777___y 460 GGAAAACGAGTGGTCATCTCAGGAGGCGGCGACTCAGCGGTTGACTGGGC 509
BSNT_00576___ 513 TAATGAGCTTGAACCGATTGCGGCGTCTGTGACTGTCGTTCATCGGCGTG 562
.||||..||||..||.|||||.|....|||.||||||||.|||||.||||
BPUM_0777___y 510 AAATGCCCTTGTTCCAATTGCTGAAAGTGTCACTGTCGTGCATCGCCGTG 559
BSNT_00576___ 563 AGGAATTCGGCGGA-ATG-GAAAGCAGCGTGACGAAAATG-AGGCAATCA 609
|....||.||.||| ||| |||| |.|||..|.||.||| |||| |||.
BPUM_0777___y 560 ACATGTTTGGTGGACATGAGAAA--AACGTCGCCAACATGAAGGC-ATCT 606
BSNT_00576___ 610 TCGGTGCGGGTGCTTACTCCTTATCGGCTAGAGCAGTTGAACGG------ 653
|..|..||..|..|.||.|| ||| |||||.|
BPUM_0777___y 607 TGCGCACGAATTTTAACCCC------------GCA--TGAACTGACCGAC 642
BSNT_00576___ 654 ------GGATAAAGAGGGCATCAAAA-----GCGTGACCGTTTGTCATAC 692
||..|| ||...||||| ||| ||||
BPUM_0777___y 643 CTTCATGGTCAA----GGTGACAAAATTGATGCG---------GTCA--- 676
BSNT_00576___ 693 TGAGTC------TAGCCAGAGGGAAGATATAGAG---GTTGA---TGA-G 729
.||.|| |||..|.||| |||.||.||| .|.|| .|| |
BPUM_0777___y 677 CGATTCAACATTTAGAAACAGG--AGAAATCGAGCGAATAGAAACAGACG 724
BSNT_00576___ 730 CTG--ATCATTAATCATGGTTTCAAAATTGATCTGGGGCCG----ATGAT 773
||| |||.|.|||||.||..|.|||..||||.||.| || ||.|
BPUM_0777___y 725 CTGTCATCGTCAATCACGGCATGAAAGGTGATTTGAG--CGTGCTATCA- 771
BSNT_00576___ 774 GGAGTGGGGGCT-------GGAGATTGAAGGAGGA-------AGG---GT 806
||.|||||.|| || ||||.|.||| ||| .|
BPUM_0777___y 772 -GAATGGGGACTCAAGCAAGG----TGAATGGGGACTCATCGAGGTCAAT 816
BSNT_00576___ 807 GAAAGCTGACAGACATATGCGAACGAATCTTCCGGGCGTGTTTGTGGCGG 856
|||| |.|||..|||.|||.|.||||||||.|.||.||..|
BPUM_0777___y 817 GAAA----------AAATGGAAACCAATTTACCGGGCGTCTATGCGGTAG 856
BSNT_00576___ 857 GCGACGCGGCTTTTTATG--------AAAGCAAGCTGAGATTAATTGCCG 898
|||| |||||| |||||||..|..|.||||||||.|
BPUM_0777___y 857 GCGA--------TTTATGTACACATAAAAGCAAAGTTCGCTTAATTGCTG 898
BSNT_00576___ 899 GCGGC-----TTTACCGAAGGCCCGACA--GCAGTCAACAGCGCTAAGGC 941
| |.| ||.||.|| |.|| ||..||||.|||||.|||..
BPUM_0777___y 899 G-GACATTTGTTGACGGA------GTCAATGCGCTCAATAGCGCGAAGCT 941
BSNT_00576___ 942 TTATTTGGATCCTAAGGCTGAGAATATGGCG-ATGTATTCAACCCATCA- 989
|||..|.||.||..|.||.||.||..||||| |||| |||..|.|||.|
BPUM_0777___y 942 TTACATCGAACCAGAAGCCGAAAAAGTGGCGTATGT-TTCTTCTCATAAC 990
BSNT_00576___ 990 --------TAA----AAAATTGGTACATA-AATAA--------------- 1011
||| |||| |||.| |||.|
BPUM_0777___y 991 GAACGCTTTAAAGAGAAAA-----ACAAAGAATTACAAACGGTTGGTGCT 1035
BSNT_00576___ 1011 ------ 1011
BPUM_0777___y 1036 CGTTAA 1041
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