Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01401 and BPUM_0786
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:59
# Commandline: needle
# -asequence dna-align/BSNT_01401___yfiV.1.24716.seq
# -bsequence dna-align/BPUM_0786___yfiV.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01401___yfiV-BPUM_0786___yfiV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01401___yfiV-BPUM_0786___yfiV.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01401___yfiV
# 2: BPUM_0786___yfiV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 532
# Identity: 333/532 (62.6%)
# Similarity: 333/532 (62.6%)
# Gaps: 101/532 (19.0%)
# Score: 1055.5
#
#
#=======================================
BSNT_01401___ 1 ATGGAATATAATTTACACGATACAACAGTATTAAACGAAAACATTCTTTC 50
.|||||||||||.|.||.||.||.||.||||||||.|||.|.|||||.||
BPUM_0786___y 1 GTGGAATATAATATTCATGACACCACCGTATTAAAAGAAGAGATTCTATC 50
BSNT_01401___ 51 ATCGGAGGAACGGGAA----ATATGGGTGCTCTATATGAAAGTCTTAACG 96
..|.|||||| || |.|||||||||.|||||||||||..|.||.
BPUM_0786___y 51 TCCAGAGGAA----AAAAAGACATGGGTGCTTTATATGAAAGTACTCACA 96
BSNT_01401___ 97 TCCGCCGGCCTCGGTGATGTGTCCGAGTGGATGAAGCTGGATATGAGCAT 146
.|.||.||.||.||.||||||||.||.|||||||||||.||||||||.||
BPUM_0786___y 97 GCTGCAGGTCTTGGAGATGTGTCAGAATGGATGAAGCTCGATATGAGTAT 146
BSNT_01401___ 147 GCCGCAAATGAAAGTGCTGATGCTATTAAACAACCATGGAACATTGAAAG 196
|||.||||||||.|||||.|||||..|.||.||||||||..|..|.||.|
BPUM_0786___y 147 GCCTCAAATGAAGGTGCTCATGCTGCTCAATAACCATGGCTCTCTCAAGG 196
BSNT_01401___ 197 TGAGCGACATTGCTGAAAAAATGGGGGCTTCCCTGTCCAATACAACTGGG 246
|...|||.||.||||||||||||||.|||||..|||||||||..||.||.
BPUM_0786___y 197 TATCCGAAATCGCTGAAAAAATGGGCGCTTCTTTGTCCAATATGACAGGT 246
BSNT_01401___ 247 CTGCTTGACCGCCTTGAGAAATCAGGGTTTGTCAAACGCTCACATTCTGA 296
|||||||||||..|.||..||||....|||||..||||....||.||||
BPUM_0786___y 247 CTGCTTGACCGGTTAGAACAATCTAAATTTGTTGAACGAAAGCACTCTG- 295
BSNT_01401___ 297 AGAG-GACCGCCG---CTCTGTAGTTGTTCAGTTGACAGAAAATGCGAAA 342
||.| |||||..| |..|||.||.| |..|.||.|||.|.||||||
BPUM_0786___y 296 AGCGTGACCGGAGAATCATTGTCGTCG---AACTAACTGAAGAAGCGAAA 342
BSNT_01401___ 343 AAGATTTTCCGGGGTTTGTATGAAAAAGGCCACCTGAAATTGAAGCGTTC 392
||.||||||.|..|..|.|||.|||||||.||| |||| || .||
BPUM_0786___y 343 AATATTTTCAGAAGCATTTATCAAAAAGGACAC--GAAA---AA---ATC 384
BSNT_01401___ 393 ATTAGAGCTGCTGTCCCCTG----------------------AAGAAAAG 420
| |.|.|| ||||| |||||||
BPUM_0786___y 385 A--AAAACT------CCCTGCAACGGCTCAATGACGGGGAAAAAGAAAA- 425
BSNT_01401___ 421 CAGGCTGTTTC--CGAAGGGCTGTCTATCCTTTCAAGAGCATTAGAAAAA 468
|| || ||||||||||.|||| .|||||||||
BPUM_0786___y 426 -AG------TCAACGAAGGGCTGGCTAT------------TTTAGAAAAA 456
BSNT_01401___ 469 GC----------GAA-------AAAAGAATAA 483
|| ||| ||
BPUM_0786___y 457 GCACTGCGTCCTGAACGCGGCTAA-------- 480
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