Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01418 and BPUM_0796

See Amino acid alignment / Visit BSNT_01418 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_01418___yfhH.1.24716.seq
#    -bsequence dna-align/BPUM_0796___yfhH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01418___yfhH-BPUM_0796___yfhH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01418___yfhH-BPUM_0796___yfhH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01418___yfhH
# 2: BPUM_0796___yfhH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     214/344 (62.2%)
# Similarity:   214/344 (62.2%)
# Gaps:          58/344 (16.9%)
# Score: 591.5
# 
#
#=======================================

BSNT_01418___      1 ATGGAGAAACGATACAGTCAAATGACACCTCACGAACT----CAATACCG     46
                     |||||.|||||.||.|||.|.|||||.....|||||.|    |||    |
BPUM_0796___y      1 ATGGACAAACGTTATAGTGAGATGACGGAATACGAATTGAAGCAA----G     46

BSNT_01418___     47 AAATCGCATTACTTTCTGAAAAAGCAAGAAAAGCCGAACAGCATGGAATC     96
                     |.||.||.|..|||||||||||||||.||||.||.||.||||.|||.||.
BPUM_0796___y     47 AGATTGCCTCTCTTTCTGAAAAAGCACGAAAGGCTGAGCAGCTTGGCATT     96

BSNT_01418___     97 ATAAACGAACTGGCAGTGCTCGAACGGAAAATTACG--ATGGCAAAAGCA    144
                     .|.||.|||...||.||..|.|||||||||||  ||  |||||.|||||.
BPUM_0796___y     97 GTGAATGAATATGCCGTCTTAGAACGGAAAAT--CGATATGGCTAAAGCC    144

BSNT_01418___    145 TA-TTTGCTGAACCCGGAA-----GATTACTCACCGGGAGAAA----CAT    184
                     || ||.|..||.||    |     |||| |..|||     |||    |.|
BPUM_0796___y    145 TACTTAGTAGATCC----AGCCTTGATT-CAAACC-----AAAACGGCCT    184

BSNT_01418___    185 ATCGTGTGGAAAACACTGAGGACGAGTTTACCATCAGT----TATTTAAA    230
                     |||...|..||.|.||.||.||.|.||||    |..||    ||||||||
BPUM_0796___y    185 ATCAAATTAAAGATACAGACGAAGCGTTT----TATGTGGAATATTTAAA    230

BSNT_01418___    231 TGGCGTTTTCGCATGGGGATACAGGACCTCTTCCCCCCAGC--------A    272
                     |||.||.||.||.|||||||||||  .||.|      ||||        |
BPUM_0796___y    231 TGGTGTATTTGCGTGGGGATACAG--ACTAT------CAGCTCCAAATAA    272

BSNT_01418___    273 AGAGGAAGCTCTGCCAATCTCAGTATTGCAAGAAAAA-GAATAA    315
                     |||.||.||.|||||.||.|||.|..|| |.|||||| ||.|.|
BPUM_0796___y    273 AGAAGATGCCCTGCCCATTTCAATGCTG-ACGAAAAAGGACTGA    315


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.