Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01439 and BPUM_0816

See Amino acid alignment / Visit BSNT_01439 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:01
# Commandline: needle
#    -asequence dna-align/BSNT_01439.1.24716.seq
#    -bsequence dna-align/BPUM_0816.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01439-BPUM_0816.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01439-BPUM_0816.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01439
# 2: BPUM_0816
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 340
# Identity:     166/340 (48.8%)
# Similarity:   166/340 (48.8%)
# Gaps:         107/340 (31.5%)
# Score: 401.0
# 
#
#=======================================

BSNT_01439         1 ATGATTAAAGGAGGAAATGTTTATACTTTCATCAGGCTGAAGGAGGAACC     50
                                                                       
BPUM_0816          0 --------------------------------------------------      0

BSNT_01439        51 GATGACCGAATTTGAAAAGCTGGTAAGTGAACAGATGAAAACGATGGATA    100
                      |||.|.||.||.||..||||.||||..|||||.|||.||...||||||.
BPUM_0816          1 -ATGTCTGATTTCGATCAGCTTGTAAAAGAACAAATGCAACTCATGGATC     49

BSNT_01439       101 AGCTTCTCGATCTCCAATCAGAGCTCGACCGCTGC----AAACA------    140
                     |.||.|||.||.|.||...|||.|||||.|..|||    |||||      
BPUM_0816         50 AACTGCTCAATGTACAGGGAGAACTCGATCTATGCTTAGAAACAGAAAAA     99

BSNT_01439       141 -AATTG----AGGCGGAACTCCGGCATTTGGAAAGGGATGCAAGGCTGCG    185
                      |||||    |.|..|||             |||       ||.||.|.|
BPUM_0816        100 CAATTGCTACAAGATGAA-------------AAA-------AAAGCAGAG    129

BSNT_01439       186 TGG-----GATTCAGGCTGAAATTGCGGTAAAACG-GAAACACCTTGCCG    229
                     |||     |.||||.|.|.||||....|..||||| |||..||  |||  
BPUM_0816        130 TGGACCAAGCTTCATGATCAAATCAAAGAGAAACGTGAAGAAC--TGC--    175

BSNT_01439       230 ATATACAGGATA-----TGTTT-CAAAAGCAGACAGAGCAGGTCATTCGT    273
                       |.|.||...|     ||||| ||||| ||||||||..|||||||...|
BPUM_0816        176 --AAAAAGTCCAAACCTTGTTTACAAAA-CAGACAGAAGAGGTCATCAAT    222

BSNT_01439       274 TCATAT-CGCAGCTCAGAAAAGCCGTCTTCCTTTGTGTAG    312
                     |||||| .||||.| .||||||...||..||.|..||||.
BPUM_0816        223 TCATATAAGCAGAT-GGAAAAGAGTTCAACCGTGATGTAA    261


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