Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01444 and BPUM_0825
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:02
# Commandline: needle
# -asequence dna-align/BSNT_01444___gsaB.1.24716.seq
# -bsequence dna-align/BPUM_0825___gsaB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01444___gsaB-BPUM_0825___gsaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01444___gsaB-BPUM_0825___gsaB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01444___gsaB
# 2: BPUM_0825___gsaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1333
# Identity: 977/1333 (73.3%)
# Similarity: 977/1333 (73.3%)
# Gaps: 80/1333 ( 6.0%)
# Score: 3498.0
#
#
#=======================================
BSNT_01444___ 1 TTGCAT-------ACAAAATC-----AATTGAACTTCACAATGAGGCATT 38
|| |||.|||| |||| ||.|| |.|||||..|
BPUM_0825___g 1 ----ATGAAATTCACAGAATCAGAAAAATT--ACATC---AAGAGGCGCT 41
BSNT_01444___ 39 ACAGCACATTGTCGGCGGTGTAAACAGCCCGTCTAGATCATATAAAGCAG 88
..||||.|||||.||.|||||.||||||||.|||.|.||||||||.||||
BPUM_0825___g 42 GGAGCATATTGTTGGAGGTGTCAACAGCCCCTCTCGTTCATATAAGGCAG 91
BSNT_01444___ 89 TCGGCGGCGGTTCTCCTGTTGCAATGGAGAAAGCAAGCGGCGCTTATTTT 138
|.||.||||||||.||.||.||.|||||.||||.|...||||||||||||
BPUM_0825___g 92 TAGGTGGCGGTTCACCCGTAGCTATGGAAAAAGGAGAAGGCGCTTATTTT 141
BSNT_01444___ 139 TGGGATGTGGACGGCAACAAA----TACATCGATTATTTAGCGGCGTACG 184
||||||||.||||| ||| ||.||||||||.|||||.||.||||
BPUM_0825___g 142 TGGGATGTTGACGG----AAATCGCTATATCGATTACTTAGCAGCATACG 187
BSNT_01444___ 185 GTCCGATTATTACAGGACATGCCCACCCGCATATTACAGAAGCGATTAAA 234
|.||.||||||||.||||||||||||||.|||||||||.|||||||||.|
BPUM_0825___g 188 GCCCTATTATTACGGGACATGCCCACCCTCATATTACAAAAGCGATTACA 237
BSNT_01444___ 235 AAAGCGGCAGAGAAC-GGTGTATTGTATGGAACACCAACGAAACACGAGG 283
||||||||.|| |.| |||||..|.||.|||||.||||||||.||.||.|
BPUM_0825___g 238 AAAGCGGCTGA-ATCAGGTGTTCTTTACGGAACGCCAACGAAGCATGAAG 286
BSNT_01444___ 284 TTACATTTGCAAAGATGCTCAAAGAAGCCATTCCCGCTATGGACAAAGTA 333
|.||.|||||.||.|||||.||||||||.||.||.|||.||||||||||.
BPUM_0825___g 287 TCACTTTTGCCAAAATGCTGAAAGAAGCTATGCCTGCTTTGGACAAAGTT 336
BSNT_01444___ 334 AGATTCGTCAATTCGGGTACAGAAGCCGTTATGACGACCATCCGCGTGGC 383
.|.||.||||||||.|||||.||||||||.|||||.||.||.||.|||||
BPUM_0825___g 337 CGCTTTGTCAATTCAGGTACTGAAGCCGTGATGACAACGATTCGTGTGGC 386
BSNT_01444___ 384 TCGCGCATATACAGGCCGGACAAAAATCATTAAATTTGCGGGCTGTTATC 433
.||.||.|||||||||.|.|||||.||||||||.|||||.||.||.||||
BPUM_0825___g 387 ACGTGCTTATACAGGCAGAACAAAGATCATTAAGTTTGCCGGGTGCTATC 436
BSNT_01444___ 434 ACGGGCATTCGGACCTTGTGCTTGTCGCCGCAGGCTCCGGCCCGTCTACT 483
||||.||.||.||.|||||.|||||.||.||.|||||.||.||.||.|||
BPUM_0825___g 437 ACGGTCACTCTGATCTTGTACTTGTAGCAGCTGGCTCTGGTCCTTCCACT 486
BSNT_01444___ 484 CTTGGCACACCAGACTCAGCCGGTGTACCGAAAAGCATTGCAAACGAAGT 533
.|.||.||.||.||.|||||.||.|||||.|||||||||||.||.|||||
BPUM_0825___g 487 TTAGGAACCCCTGATTCAGCAGGCGTACCAAAAAGCATTGCCAATGAAGT 536
BSNT_01444___ 534 GATCACAGTACCATTTAATGATATCAATAGCTATAAAGCGGCTCTTGATA 583
.||.||.||.||||||||||||||..|.|||||.||||..||..|.|||.
BPUM_0825___g 537 CATTACCGTTCCATTTAATGATATTGACAGCTACAAAGAAGCATTGGATC 586
BSNT_01444___ 584 AATGGGGCAGTGAAATCGCGGCGGTTCTCGTTGAACCGATTGTCGGCAAC 633
.|||||||..||||.||||.||.||.||.||.||.||.||||||||.|||
BPUM_0825___g 587 GATGGGGCGATGAAGTCGCAGCTGTCCTTGTCGAGCCAATTGTCGGGAAC 636
BSNT_01444___ 634 TTCGGTATCGTGGAGCCGAAAGAGGGCTTCTTAGAAAAAGTAAATGAATT 683
|||||.|||||||||||.||.||.||.|||.|..||.||||.|||||..|
BPUM_0825___g 637 TTCGGCATCGTGGAGCCTAAGGACGGTTTCCTGCAACAAGTCAATGACCT 686
BSNT_01444___ 684 GACACAT--AATGCAGGCGCTCTCGTTATTTACGATGAAGTCATTACGGC 731
.||.||| ||.| |||||.||.||.||.||.||||||||.|||||.||
BPUM_0825___g 687 CACTCATGAAAAG--GGCGCACTTGTGATCTATGATGAAGTGATTACAGC 734
BSNT_01444___ 732 TTTCCGCTTTATGTATGGCGGCGCGCAGGATCT--CTTACAGGTGAAACC 779
|||||||||||||||.||.|||||.||||| || ||| ||.||.|||||
BPUM_0825___g 735 TTTCCGCTTTATGTACGGAGGCGCACAGGA-CTTGCTT-CAAGTAAAACC 782
BSNT_01444___ 780 AGATTTAACAGCACTCGGGAAAATTATCGGCGGCGGACTTCCGATTGGCG 829
.||..|.||.|||.|.||.|||||.||.||.||||||||.|||||.||.|
BPUM_0825___g 783 TGACCTCACCGCATTAGGAAAAATCATTGGTGGCGGACTCCCGATCGGTG 832
BSNT_01444___ 830 CCTATGGCGGCAAACAAGAAATCATGGAGCAGGTAGCTCCGCTAGGACCT 879
|.|||||.||.|||.|||||||.||||||||.||.|||||.||.|||||.
BPUM_0825___g 833 CTTATGGGGGTAAAAAAGAAATTATGGAGCAAGTCGCTCCTCTTGGACCG 882
BSNT_01444___ 880 GCTTATCAGGCAGGAACAATGGCAGGGAACCCCGCTTCCATCCTATCAGG 929
||.|||||.||.||.||.||||||||.||.||.||.|||||.||.||.||
BPUM_0825___g 883 GCCTATCAAGCTGGCACGATGGCAGGAAATCCTGCATCCATTCTTTCTGG 932
BSNT_01444___ 930 CATCGCTTGTCTGGAAGTGCTCAAAGAAAAAGGCGTGTATGAAAAGCTTG 979
.||.||.||..||||||||.|.|||.||.|.||.||.|||||....||.|
BPUM_0825___g 933 AATTGCCTGCTTGGAAGTGTTAAAACAAGATGGTGTTTATGAGCGTCTAG 982
BSNT_01444___ 980 ATCACCTTGGCGCTATGCTTGAGGAAGGTATTTTGAAG--CACGCAGAAA 1027
||||.||||||||||||||.||.|||||.||||| || ||.||..|||
BPUM_0825___g 983 ATCAGCTTGGCGCTATGCTAGAAGAAGGCATTTT--AGCCCATGCCAAAA 1030
BSNT_01444___ 1028 CACACGGCATCA-----CCATTACGGTCAACCGGTTAAAAGGTGCGCTCA 1072
.| ||||| ..|||||.||.||.||.||||||||.||.||||
BPUM_0825___g 1031 AA-----CATCAAGTAGATATTACAGTGAATCGCTTAAAAGGGGCTCTCA 1075
BSNT_01444___ 1073 CGGTATATTTCTCTGATGAGAAA--GTGGAAAATTACGAGCAGGCTGA-- 1118
|.|||||||||.| |..||||| .|.|.|||.||.|||||||||||
BPUM_0825___g 1076 CTGTATATTTCAC--AAAAGAAACCATTGTAAACTATGAGCAGGCTGAAA 1123
BSNT_01444___ 1119 --ACGGAGTGACGGAGAAACATTCGCTACG-TTTTTTAAGCTGATGCTGG 1165
||| ||.||.||||..||.|| .|| ||.|||||..|.|||||..
BPUM_0825___g 1124 ATACG----GATGGCGAAATGTTTGC-CCGCTTCTTTAAATTAATGCTTT 1168
BSNT_01444___ 1166 AACGCGGAATTAATTTAGCACCTTCTAAGTATGAAGCTTGGTTTATTACC 1215
.||..||.|||||..|.||.||||||||.||||||||||||||..|.||.
BPUM_0825___g 1169 CACAAGGGATTAACCTCGCTCCTTCTAAATATGAAGCTTGGTTCTTAACG 1218
BSNT_01444___ 1216 ACAGCACATACAGAGCAGGATATTAAAGACACGCTTGC-AGCGGTCGAGG 1264
|..||||||||.||..|.||||||...||.|||| ||| |||.||.||..
BPUM_0825___g 1219 ATCGCACATACTGAAAAAGATATTTCTGAGACGC-TGCAAGCAGTAGATC 1267
BSNT_01444___ 1265 ATGCATTTAAACATCTAAAA-------AACTAG 1290
.|||.|||.||||..|.||| ||
BPUM_0825___g 1268 GTGCGTTTGAACAGTTGAAACAATCATAA---- 1296
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