Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03467 and BPUM_0840

See Amino acid alignment / Visit BSNT_03467 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_03467___sipS.1.24716.seq
#    -bsequence dna-align/BPUM_0840___sipP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03467___sipS-BPUM_0840___sipP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03467___sipS-BPUM_0840___sipP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03467___sipS
# 2: BPUM_0840___sipP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 706
# Identity:     373/706 (52.8%)
# Similarity:   373/706 (52.8%)
# Gaps:         182/706 (25.8%)
# Score: 1039.0
# 
#
#=======================================

BSNT_03467___      0 --------------------------------------------------      0
                                                                       
BPUM_0840___s      1 TTGATTTGTTGGCAAAATATGTTTATATTTATGGTGATACAATACAAGAG     50

BSNT_03467___      0 --------------------------------------------------      0
                                                                       
BPUM_0840___s     51 TAAATGCTGGCGTAAAGCTGGCAGAAACTCATTTCGTCCTAGGGGATTTC    100

BSNT_03467___      1 -----------TTGAAATCAGAAAATGTTTCGAAGAAAAAATCAATATTA     39
                                .|||   ||..||||       |.|||||..|||.|..|
BPUM_0840___s    101 AGGAGGAGCTTATGA---CAACAAAT-------ACAAAAACACAAAAAAA    140

BSNT_03467___     40 GAA----------------TGGGTTAAAGCAATTGTGATTGCTGTCGTTC     73
                     |||                |||.|||||||.|||.|.||.||..||.|..
BPUM_0840___s    141 GAAGTCAGAAGTATGGGGCTGGCTTAAAGCGATTTTAATCGCATTCATCG    190

BSNT_03467___     74 TTGCTTTGCTCATCCGCAACTTTATTTTTGCGCCGTATGTCGTTGACGGT    123
                     .||.|||..||||.||.||||||.|.||.||.|||||..|.||..|.|  
BPUM_0840___s    191 CTGTTTTTATCATTCGTAACTTTTTATTCGCACCGTACATTGTAAAAG--    238

BSNT_03467___    124 GAA--TCCATGGAACCTACACTTCACGATCGTGAAAGGGTCTTTGTCAAT    171
                     |||  ||.||||||||.|||.|.||..||...|||.||||.|||||.|||
BPUM_0840___s    239 GAACCTCTATGGAACCAACATTGCATAATACAGAACGGGTTTTTGTGAAT    288

BSNT_03467___    172 ATGACAGTCAAATACATCGGCGAGTTTGATAGAGGAGA---CATTG-TCG    217
                     |..||.||..|.|||.||||.||.|.|.|..|.|||.|   ||||| ||.
BPUM_0840___s    289 AAAACGGTTGATTACTTCGGTGATTATAAGCGGGGACAGATCATTGTTCT    338

BSNT_03467___    218 TGTTAAACGGAGATGA------TGTTCACTATGTCAAACGTATT-ATCGG    260
                     ||    |.||.||.||      ...|||.|||||.||||| ||| ||.||
BPUM_0840___s    339 TG----ATGGGGAAGACCGCAGCACTCATTATGTTAAACG-ATTAATTGG    383

BSNT_03467___    261 CCTTCCCGGCGATACGGTTGAGATGAAAAATGACCAGCTCTATATCAACG    310
                     ..|.||.||.||||...||||.||||||||||||||.||.|||.||||.|
BPUM_0840___s    384 TTTACCTGGTGATAAAATTGAAATGAAAAATGACCAACTGTATGTCAATG    433

BSNT_03467___    311 GGAAAAAGGTGGACGAACCTTATTTGGCGGCTAATAAAAAGAGAGCGAAA    360
                     |..||||.||.|..||.|||||.||.|||.|.||.|||||||.|||  |.
BPUM_0840___s    434 GTCAAAAAGTAGCTGAGCCTTACTTAGCGTCAAACAAAAAGAAAGC--AG    481

BSNT_03467___    361 CAG--GACGGTAAACCT--TTGACCGATGATTTCGGCCCGGTTAAAGTGC    406
                     |||  ||.||  .|.||  |||||...||||||.||.||..|||..||.|
BPUM_0840___s    482 CAGCAGATGG--CATCTTGTTGACACCTGATTTTGGTCCTCTTACTGTAC    529

BSNT_03467___    407 CTGATAA--CAAGTATTTTGTGATGGGTGACAATCGTCGGAATTCCATGG    454
                     |  |.||  .|||||||||||.||||||||||||||||..|||||.||||
BPUM_0840___s    530 C--AAAAGGAAAGTATTTTGTCATGGGTGACAATCGTCAAAATTCAATGG    577

BSNT_03467___    455 ACAGCCGTAACGGACTT-GGCCTCTTCACGAAAAAACAAATTGCGGGTAC    503
                     ||||.||.||.|| ||| ||.||.||.||.||.|...|.|||...||.||
BPUM_0840___s    578 ACAGTCGCAATGG-CTTAGGTCTTTTTACAAAGAGTGATATTCAAGGAAC    626

BSNT_03467___    504 GTCAAAGTTTGTTTTCTACCCGTTTAACGAAATGCGCAAAACAAATTAG-    552
                     |.||...|||||.||.||.||.||..|.||..|.||    ||.|.|||. 
BPUM_0840___s    627 GACATCATTTGTGTTTTATCCTTTCCAAGACGTTCG----ACTACTTAAC    672

BSNT_03467___    552 ------    552
                           
BPUM_0840___s    673 GATTAA    678


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