Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01516 and BPUM_0843

See Amino acid alignment / Visit BSNT_01516 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_01516___cspR.1.24716.seq
#    -bsequence dna-align/BPUM_0843___cspR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01516___cspR-BPUM_0843___cspR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01516___cspR-BPUM_0843___cspR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01516___cspR
# 2: BPUM_0843___cspR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 483
# Identity:     377/483 (78.1%)
# Similarity:   377/483 (78.1%)
# Gaps:          18/483 ( 3.7%)
# Score: 1498.0
# 
#
#=======================================

BSNT_01516___      1 GTGGCATTACATGTCGTTTTATATCAACCAGAAATTCCCGCTAACACAGG     50
                     .|||.|.|.|||||||||||||||||||||||.|||||.|||||.||.||
BPUM_0843___c      1 TTGGGACTTCATGTCGTTTTATATCAACCAGAGATTCCAGCTAATACTGG     50

BSNT_01516___     51 GAATATTGCACGTACTTGTGCAGCAACCAATACAACGCTACACCTGATTC    100
                     .||||||||.|||||.|||||||||||.||||||||.||.||.|||||||
BPUM_0843___c     51 AAATATTGCGCGTACATGTGCAGCAACAAATACAACCCTTCATCTGATTC    100

BSNT_01516___    101 GTCCGCTCGGCTTTTCAACGGATGATAAAATGCTGAAGCGTGCCGGACTC    150
                     |||||||.||.|||||.||.|||||||||||||||||||||||.||||||
BPUM_0843___c    101 GTCCGCTTGGTTTTTCGACAGATGATAAAATGCTGAAGCGTGCAGGACTC    150

BSNT_01516___    151 GATTATTGGGAGTTTGTTAATGTTGTGTATCATGATTCGTTAGAAGAATT    200
                     |||||||||.|.|.||..|||||.||.||||||||.|||.|.||.|||||
BPUM_0843___c    151 GATTATTGGAAATATGCCAATGTAGTCTATCATGACTCGCTTGATGAATT    200

BSNT_01516___    201 GTTTGAGGCATATGAAAAAGGCCAGTTTTTCTTTATTACAAAATTTGGCC    250
                     |||||||||..||..|||.||.||.||.||||.|||.|||||||||||||
BPUM_0843___c    201 GTTTGAGGCTCATCCAAAGGGGCAATTCTTCTATATCACAAAATTTGGCC    250

BSNT_01516___    251 AGCAGCCTCATACATCATTTGATTACACTGATCTTGACGAGGATTATTTC    300
                     |..||||.|||||..|||||||||||.||.|.||.||.||.||.||||||
BPUM_0843___c    251 AAAAGCCGCATACGACATTTGATTACTCTCAGCTAGATGAAGACTATTTC    300

BSNT_01516___    301 TTCGTGTTCGGAAGAGAAACAAGCGGTTTGCCAAAGGATTTAATTCAAAA    350
                     |||||.||.||.|||||.|||||.||.||.||.||.|||||.||..|...
BPUM_0843___c    301 TTCGTATTTGGCAGAGAGACAAGTGGGTTACCGAAAGATTTGATCGAGCG    350

BSNT_01516___    351 TAATATGGACCGCTGCCTGCGTCTTCCGATGACAGAGCATGTCAGATCGT    400
                     .||||||||||||||.||.|||.|.|||||||||||.|||||    ||||
BPUM_0843___c    351 GAATATGGACCGCTGTCTTCGTTTACCGATGACAGAACATGT----TCGT    396

BSNT_01516___    401 ----TAAACCTGTCCAATACTGCCGCGATTCTTGTTTATGAAGCGCTGCG    446
                         |.||.||.||.|||||.||.||.||||||||.||||||||.||.||
BPUM_0843___c    397 TCTCTGAATCTATCGAATACGGCAGCAATTCTTGTGTATGAAGCACTTCG    446

BSNT_01516___    447 CCAGCAAAATTACCG-----TGATTTAAAATAG    474
                     ||||||..|.|||||     ||||||.|     
BPUM_0843___c    447 CCAGCAGCAATACCGTGATCTGATTTGA-----    474


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