Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01513 and BPUM_0846

See Amino acid alignment / Visit BSNT_01513 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:03
# Commandline: needle
#    -asequence dna-align/BSNT_01513___yhzB.1.24716.seq
#    -bsequence dna-align/BPUM_0846___yhzB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01513___yhzB-BPUM_0846___yhzB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01513___yhzB-BPUM_0846___yhzB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01513___yhzB
# 2: BPUM_0846___yhzB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity:     391/715 (54.7%)
# Similarity:   391/715 (54.7%)
# Gaps:         209/715 (29.2%)
# Score: 988.0
# 
#
#=======================================

BSNT_01513___      1 GTGAATAT-CAAACTTGA---TTCTGTTATTACTG--AACGTGCGGCCGG     44
                     |||||.|| ||.| |.||   |||   |..|.|||  |||      |||.
BPUM_0846___y      1 GTGAAGATACATA-TGGAAATTTC---TCATCCTGAAAAC------CCGT     40

BSNT_01513___     45 CTTACATGCAGCTGCTG---TCATT---TATGAGAATATCGAAGTCGGCT     88
                     ||   ||.||  ||.||   ..|||   |||....||||.|||||.|||.
BPUM_0846___y     41 CT---ATCCA--TGTTGGAAAGATTGAATATTCTCATATTGAAGTTGGCA     85

BSNT_01513___     89 CCTCACCGCAAATGCTGAAAGGCAGACTCCGCCTGTTTCAAGAATCCTTG    138
                     |.||.||.||||||.|.||||||.|..|.|||||||||||||||||.||.
BPUM_0846___y     86 CATCCCCTCAAATGTTAAAAGGCCGGTTACGCCTGTTTCAAGAATCTTTA    135

BSNT_01513___    139 TTTTTCGACTATGCGGACGGCGGTATATCCGATGAATCCTTCG-------    181
                     ||.||.||  ||.||.|             |||.||..|||.|       
BPUM_0846___y    136 TTCTTTGA--ATACGAA-------------GATAAAGTCTTAGAGGAAGT    170

BSNT_01513___    182 --------TCAAGGAATGGCAGGAACTCTTTAAACAGCTTAACCCTTCAT    223
                             ||||.||||||..|||.||.||.|||.|       |.|||.|
BPUM_0846___y    171 ACCAGCAATCAAAGAATGGACGGACCTTTTAAAAGA-------CGTTCCT    213

BSNT_01513___    224 TTGAGGGAGAAACAACC--CCAATGGAGGACATGCTGGTCCCGATATCC-    270
                     ||             ||  |||||           |..|.|.||||||| 
BPUM_0846___y    214 TT-------------CCTGCCAAT-----------TCTTGCGGATATCCA    239

BSNT_01513___    271 -AAGGAACAATTCATGGAAAGTATAGACTCGGCCCATGAC--ACA-----    312
                      |||||||||||         |||.||||||.||.||..|  |||     
BPUM_0846___y    240 AAAGGAACAATT---------TATTGACTCGACCAATTCCGTACAGGATT    280

BSNT_01513___    313 -ATCGAT-TTTTTCGCATTAAAATATTCTC-TGCCTATTATGATTTATGA    359
                      .||||| ||||||.|.|||||||||| || |||||||..|||..|..||
BPUM_0846___y    281 TGTCGATCTTTTTCTCTTTAAAATATT-TCTTGCCTATCCTGACCTTCGA    329

BSNT_01513___    360 TGCCG--------GAA-AGC----TT-----------CATGAG-CCGGTC    384
                     |||.|        ||| |||    ||           |||||| |.||  
BPUM_0846___y    330 TGCTGATCGCCTAGAAGAGCCACTTTCACTAGCAAAACATGAGACTGG--    377

BSNT_01513___    385 CGGATCTCATTG---GG--AGAAAAAGAAAACATACTGCTTTTCTCTGAT    429
                         ||.|||||   ||  |||.||||      .|..||||         
BPUM_0846___y    378 ----TCACATTGAATGGCAAGACAAAG------CAGGGCTT---------    408

BSNT_01513___    430 GAAAACGGCATTTTTGGCGATTTCAAAAACAACGTCAACCACTATCCCGT    479
                       |||  |.|||.|      ||||..||.||| ||.||.|    ||.|.|
BPUM_0846___y    409 --AAA--GGATTAT------TTTCTCAACCAA-GTAAAGC----TCACAT    443

BSNT_01513___    480 TTCAAACGAGACTAAGAATATGCTGCAAATCATTTTTTTCCCGCCATCGA    529
                     |||..|.|..||.||.||.||.|||||||||||..|.||.||||||||.|
BPUM_0846___y    444 TTCTCAAGGCACAAAAAACATTCTGCAAATCATCCTGTTTCCGCCATCTA    493

BSNT_01513___    530 TT----GAGAAAAGCAGCGCTGTTAACCTCTTAT--CATCATTAACGAAA    573
                     ||    |.||||||      .||.||.||||.||  .|||.||.|||||.
BPUM_0846___y    494 TTTCCCGGGAAAAG------AGTGAAGCTCTCATTCAATCCTTGACGAAG    537

BSNT_01513___    574 ATGTTTGAACAAATTCACGGCGGCACCTATACAGTACATTGG--CTTACG    621
                     |||||||.||||||.||.||.||     |.|.||||.||..|  ||||..
BPUM_0846___y    538 ATGTTTGTACAAATACATGGTGG-----AGAAAGTAAATATGAACTTATT    582

BSNT_01513___    622 TAA------------    624
                     .||            
BPUM_0846___y    583 GAAAAAGCACTGTAG    597


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