Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01530 and BPUM_0859
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01530___yhcA.1.24716.seq
# -bsequence dna-align/BPUM_0859___yhcA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01530___yhcA-BPUM_0859___yhcA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01530___yhcA-BPUM_0859___yhcA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01530___yhcA
# 2: BPUM_0859___yhcA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1643
# Identity: 1216/1643 (74.0%)
# Similarity: 1216/1643 (74.0%)
# Gaps: 67/1643 ( 4.1%)
# Score: 4359.5
#
#
#=======================================
BSNT_01530___ 1 ATGGCTACAGGCAA-----AGAAAAAAATACAAAAAGC-----CCTATGA 40
||||| .|..||| ||.||.||| |||...||| ||| ||.
BPUM_0859___y 1 ATGGC--AAATCAACCTGCAGCAACAAA-ACAGGGAGCAGGCTCCT-TGT 46
BSNT_01530___ 41 CATTGCTGATTGTGCTAATGGCGGGTTTATTTTTGGCAATTCTAAACCAA 90
|.||.|||||..|..|||||||.||.||.||..|.||.|||.|.||||||
BPUM_0859___y 47 CTTTACTGATCATTTTAATGGCCGGGTTGTTCGTCGCGATTTTGAACCAA 96
BSNT_01530___ 91 ACACTGCTTAATGTTGCAATGCCGCACTTAATGACTGAATTTGGCGTAAG 140
||.||.||.||.||.||.|||||.||.|||||||||||||||...||.||
BPUM_0859___y 97 ACGCTTCTGAACGTAGCCATGCCCCATTTAATGACTGAATTTAATGTGAG 146
BSNT_01530___ 141 TGCAACGACGATTCAGTGGCTGACAACAGGTTACATGCTTGTTAACGGTG 190
|||||||||.|||||||||||.|||||||||||.||||||||.|||||||
BPUM_0859___y 147 TGCAACGACAATTCAGTGGCTTACAACAGGTTATATGCTTGTCAACGGTG 196
BSNT_01530___ 191 TATTGATTCCGTTATCTGCTTTCCTGATTACACGATTTGGCCAGCGGAGT 240
|..|.||||||||||||||.||..|.||.|||||.|||||.|||||.||.
BPUM_0859___y 197 TGCTCATTCCGTTATCTGCGTTTTTAATCACACGCTTTGGACAGCGTAGC 246
BSNT_01530___ 241 CTCTTTCTCGTCGCGATGTTTTGTTTTACGCTCGGTACGTTAGTCTGCGG 290
.|.||.||.||.||.|||.|.|..|||||.||.||.||.||..|.|||||
BPUM_0859___y 247 TTATTCCTAGTTGCCATGATCTCGTTTACACTAGGGACCTTTATTTGCGG 296
BSNT_01530___ 291 TATCGCACCTAACTTCTCTACAATGCTGATCGGCCGTTTGATTCAGGCCG 340
.||.||.||.||||||||.||.|||||.||||||||||||||||||||.|
BPUM_0859___y 297 GATTGCGCCGAACTTCTCGACCATGCTCATCGGCCGTTTGATTCAGGCAG 346
BSNT_01530___ 341 TGGGCGGAGGTATCTTGCAGCCGCTCGTTATGACAACCATTCTGTTAATT 390
|.|||||.||||||||||||||.|||||.||||||||.||.||.||.|||
BPUM_0859___y 347 TCGGCGGCGGTATCTTGCAGCCACTCGTGATGACAACAATCCTTTTTATT 396
BSNT_01530___ 391 TTCCCGCCTGAAAGCAGGGGGAAAGGAATGGGGATTTTCGGGCTAGCGAT 440
||.||.||.||||.|||.|||||||||||||||||||||||.||.|||||
BPUM_0859___y 397 TTTCCTCCAGAAAACAGAGGGAAAGGAATGGGGATTTTCGGTCTTGCGAT 446
BSNT_01530___ 441 GATGTTTGCTCCAGCGGTCGGCCCGACTCTTTCCGGGTGGATTATTGAGC 490
||||||||||||.|||||.||.||.||..|.||.||.|..||||||||.|
BPUM_0859___y 447 GATGTTTGCTCCTGCGGTAGGACCAACATTATCTGGTTACATTATTGAAC 496
BSNT_01530___ 491 ATTATACATGGCGCATTATGTTTTACGGACTTGTGCCGATCGGCGCAATT 540
|||||.|.|||||.|||||||||||.||||||||.||.|||||.||||||
BPUM_0859___y 497 ATTATTCTTGGCGTATTATGTTTTATGGACTTGTTCCAATCGGAGCAATT 546
BSNT_01530___ 541 GTTATCATTGTGGCTTTCTTCATCTTTAAAAATATGGTGGAGCCGCAAAA 590
||.||.||.|.|||||||||.||.||||.||||||.||.|||||..||||
BPUM_0859___y 547 GTCATTATCGCGGCTTTCTTTATGTTTAGAAATATTGTAGAGCCTAAAAA 596
BSNT_01530___ 591 AATCAAACTCGATACTCTTGGCGCAATCCTCTCGATTGTCGGATTCGCCT 640
.|||||.||.||.|..|||||.||.||.||.||.||.||.||.||.||.|
BPUM_0859___y 597 GATCAAGCTGGACAGCCTTGGTGCGATTCTTTCCATCGTTGGTTTTGCTT 646
BSNT_01530___ 641 C-CTTATTATACGGAGTCAGTGAAGCCGGATCTGACGGCTGGACCGACCC 689
| ||| .||||||||||.||||||||||||..|||.||||||||.||.||
BPUM_0859___y 647 CGCTT-CTATACGGAGTGAGTGAAGCCGGAAGTGATGGCTGGACAGATCC 695
BSNT_01530___ 690 GATTGTATTGTCTACAGTTATTATCGGAGCCATTGCAATTGTTGCT-TTT 738
|||.||.||.||.||..|||||.|.||.||.|||||.|||.|| || |||
BPUM_0859___y 696 GATCGTCTTATCGACGATTATTGTTGGTGCGATTGCGATTATT-CTCTTT 744
BSNT_01530___ 739 GTTGTTCAGCAATTGCGTCA----TGATGATCCGATGCTTGATTTCAGAG 784
.||.|.||.||..|| | ||||.|||||||||||||||||.|.|
BPUM_0859___y 745 ATTTTCCAACAGCTG----AAAGCTGATAATCCGATGCTTGATTTCCGGG 790
BSNT_01530___ 785 TGTTTAAATATGACATTTTCTCACTCTCGAGTGTCATTAATATCATTATT 834
||||||||||....|||||||||||.||.||||||||||||||.||||||
BPUM_0859___y 791 TGTTTAAATACAGTATTTTCTCACTATCAAGTGTCATTAATATTATTATT 840
BSNT_01530___ 835 ACAGTGGCACTT-TACACTGGTATGTTCCTTTTACCGATTTATCTGCAAA 883
|||||.|| ||| ||.|||||.||||||.|..||||.|||||||||||.|
BPUM_0859___y 841 ACAGTTGC-CTTATATACTGGGATGTTCTTACTACCAATTTATCTGCAGA 889
BSNT_01530___ 884 ACCTGGTCGGCTTTACGGCGCTTCAATCCGGTCTGCTTCTGCTTCCGGGT 933
||||.||.||.||||||||..|.|||||.||.||..|..|||||||.||.
BPUM_0859___y 890 ACCTCGTTGGGTTTACGGCATTGCAATCTGGGCTATTAATGCTTCCAGGG 939
BSNT_01530___ 934 GCGATCGTTATGCTGATTATGTCACCGATCTCAGGTATTTTGTTCGATAA 983
||..|.|..||||||||||||||.|||||.|||||.||||||||.|||||
BPUM_0859___y 940 GCACTTGCGATGCTGATTATGTCCCCGATTTCAGGGATTTTGTTTGATAA 989
BSNT_01530___ 984 ATTCGGACCGAGACCGCTTGCGATTATCGGGCTTCTCGTGACAGTGGTAA 1033
|||.|||||..|.||||||||||||.|.||..|.|||.|.||.||.||.|
BPUM_0859___y 990 ATTTGGACCTCGTCCGCTTGCGATTGTGGGAATGCTCATTACCGTTGTCA 1039
BSNT_01530___ 1034 CAACGTATCAA---TAC-ACGCAATTGACAATTGATACACCATATACACA 1079
|.||.| ||.| ||| |.|| ||||.|||||||||.||||||..||
BPUM_0859___y 1040 CCACAT-TCGAGTTTACAAGGC---TGACGATTGATACATCATATAGTCA 1085
BSNT_01530___ 1080 CATCATGCTGATCTATTCAATTCGTGCATTTGGTATGTCTCTCTTAATGA 1129
||||.||||.||.|||.||.|.||||||||.||||||||.|||.|.||||
BPUM_0859___y 1086 CATCGTGCTCATGTATGCAGTGCGTGCATTCGGTATGTCACTCCTTATGA 1135
BSNT_01530___ 1130 TGCCAGTCATGACAGCCGGGATGAACCAGCTTC--CTGCCCGTCTGAACA 1177
||||.||.||||||||.|||||||||||..|.| |.||.| .|.||||
BPUM_0859___y 1136 TGCCTGTGATGACAGCTGGGATGAACCAATTACCACAGCAC--TTAAACA 1183
BSNT_01530___ 1178 GCCACGGAACGGCGATGAGTAACACGCTTCGCCAAATCAGCGGATCAATC 1227
||||.||.||.||||||..|||.||..|..|.||||||||.||.||.|||
BPUM_0859___y 1184 GCCATGGTACAGCGATGTCTAATACATTGAGACAAATCAGTGGTTCGATC 1233
BSNT_01530___ 1228 GGAACAAGTTTAATTACGACGATTTATACAAACCGGACGACATTCCATTA 1277
||.||.|||||.||.||.|||||||||||.||.|||||.|||||||||||
BPUM_0859___y 1234 GGTACGAGTTTGATCACAACGATTTATACGAATCGGACAACATTCCATTA 1283
BSNT_01530___ 1278 TTCACAA-ATTGCAGATAAAACAAGCACGGCGGACCCGAACTTCCTCCAT 1326
||| ||| ||.||.|||.||||||..||.|||||||||..||||.|..||
BPUM_0859___y 1284 TTC-CAATATGGCGGATCAAACAAATACAGCGGACCCGTTCTTCATGAAT 1332
BSNT_01530___ 1327 GCGTTCCAAAATGCAGTTTCGAATTTAATGGTGAATATGAATGTGTCTTA 1376
.|||||||....||.||.||||||.|.|||....|||||..|.||.|...
BPUM_0859___y 1333 TCGTTCCAGGCAGCTGTGTCGAATGTGATGCATCATATGGGTATGACAGC 1382
BSNT_01530___ 1377 TGATACGGCGAAAACATATG--TGTACTCACATATTTATAAACACGCATC 1424
|||..|.||..|||.||||| |.|||.||..|.||||..|| |.|
BPUM_0859___y 1383 TGAAGCTGCTCAAAAATATGTATCTACCCAGCTCTTTACGAA-----AGC 1427
BSNT_01530___ 1425 AC---TCGATTCCAATGTCATGGGGATAAATGATGCCTTTATGTGGGCAA 1471
|| |.|||||.|||||.|||||.||.||||||||.|..|||||||.||
BPUM_0859___y 1428 ACAGGTTGATTCAAATGTAATGGGTATCAATGATGCTTACATGTGGGTAA 1477
BSNT_01530___ 1472 CCTTATTCTGTGTAGCAGGTTTGATTTTAAGTATCTTCCTGCGTGACGTC 1521
|.||||||||||..||.|||.|.|||.|.||..|.|||||||||||.||.
BPUM_0859___y 1478 CGTTATTCTGTGCCGCTGGTGTCATTCTCAGCTTGTTCCTGCGTGATGTA 1527
BSNT_01530___ 1522 AGAAAAGATAAATTGCGTA---------AGAAGAAAAAAGAGGAGCTTTC 1562
.|.||.||||||..|||.| ||.|.||||||.|.||..|..|
BPUM_0859___y 1528 CGTAAGGATAAAAAGCGAAAAGATCAGCAGCATAAAAAACAAGAAATGAC 1577
BSNT_01530___ 1563 ATTACTTCCTGCTCCAAAAGAAGCTAAGGAATCT------TAA 1599
|.|.|||||.||.||.||.|||||.||..||..| |||
BPUM_0859___y 1578 ACTGCTTCCAGCACCTAAGGAAGCAAACCAAGATGCAAGATAA 1620
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