Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01531 and BPUM_0860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:04
# Commandline: needle
# -asequence dna-align/BSNT_01531___yhcB.1.24716.seq
# -bsequence dna-align/BPUM_0860___yhcB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01531___yhcB-BPUM_0860___yhcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01531___yhcB-BPUM_0860___yhcB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01531___yhcB
# 2: BPUM_0860___yhcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 540
# Identity: 405/540 (75.0%)
# Similarity: 405/540 (75.0%)
# Gaps: 24/540 ( 4.4%)
# Score: 1436.0
#
#
#=======================================
BSNT_01531___ 1 ATGAAAATTTATGTAGTGTATGATAGTGAAGGCGAACATACTAAAGTGCT 50
||||||||||||||.||.||.|||||||||||.||.|||||.||||..||
BPUM_0860___y 1 ATGAAAATTTATGTCGTATACGATAGTGAAGGTGACCATACAAAAGCACT 50
BSNT_01531___ 51 TGCAGAAGCGATTGCTGAAGGCGCGAGAGAAAACGGCGC-GGCTGAAGTG 99
.||||||||.|||||.|..||.|| ||...||||||.|| |||||||||.
BPUM_0860___y 51 GGCAGAAGCAATTGCAGCGGGTGC-AGGTGAAACGGAGCAGGCTGAAGTA 99
BSNT_01531___ 100 TTCATCGACCATGT---AGATCAGGCTGATATCCGCAAGCTTAAAGATAT 146
|||.|.||.||.|| |||| ||.|||||.|||||||||.|..|.||
BPUM_0860___y 100 TTCGTTGATCACGTGAAAGAT---GCGGATATTCGCAAGCTTGATCAAAT 146
BSNT_01531___ 147 GGATGCGATTATTTGGGGATGCCCAGGGCATTTCGGAACAATCAGCTCCG 196
||||||.|||||||||||.||.||.||.||.||.|||||.||.|| |.|.
BPUM_0860___y 147 GGATGCAATTATTTGGGGCTGTCCTGGTCACTTTGGAACCATTAG-TGCT 195
BSNT_01531___ 197 GTCTTAAA-ACTTGGATCGACAGACTTGGCTACTTGTGGGCTGAAGGCGA 245
|..||||| ||.|||||.|||.|.|||||||||.|.|||||||||||..|
BPUM_0860___y 196 GGATTAAAGACATGGATTGACCGTCTTGGCTACCTATGGGCTGAAGGAAA 245
BSNT_01531___ 246 GCTGATCAACAAAGTCGGTGCTGTCTTCTGCACAACGGCAACAACACACG 295
..|.|||.|.|||||||||||.||.|||||.|||||.||.|||||.||||
BPUM_0860___y 246 ATTAATCGATAAAGTCGGTGCCGTTTTCTGTACAACTGCTACAACGCACG 295
BSNT_01531___ 296 GCGGCTTGGAAATGACAATGCACAATTTAATCACGCCGATGTTCCACCAA 345
||||.||.||||||||.|||||.|||||.||.||.||.||||||||||||
BPUM_0860___y 296 GCGGTTTAGAAATGACGATGCATAATTTGATTACCCCAATGTTCCACCAA 345
BSNT_01531___ 346 GGCATGATTGTTGTCGGACTGCCTGGGAACGTGCCTGAAAACGCACTTTA 395
||.|||.||||.||.||.||.|||||.||.|||||.||.||.||..|.||
BPUM_0860___y 346 GGGATGCTTGTCGTTGGTCTTCCTGGAAATGTGCCAGAGAATGCGTTATA 395
BSNT_01531___ 396 TGGCTCTTATTACGGAGCAGGTGTCACTTGTCCGGTAGACAGTGATGAGT 445
|||||||||.||.|||||||||||.||.||||||.|.||...||||||..
BPUM_0860___y 396 TGGCTCTTACTATGGAGCAGGTGTGACATGTCCGATTGATTCTGATGAAG 445
BSNT_01531___ 446 TAATGTCTGA-GGAAGGTATTCAGCTTGGACGCGCGTTGGGAAGACGTGT 494
|.||.|| || .|||||||||.|.||.|||...||.||.|||||||||||
BPUM_0860___y 446 TGATTTC-GACAGAAGGTATTGAACTCGGAAAAGCATTAGGAAGACGTGT 494
BSNT_01531___ 495 --CAGCCAAGTCACAG-GAAACCTAACAGCAGGACAGTAA 531
||.| ||||||.| |..|..|| ||| || |||
BPUM_0860___y 495 AGCATC--AGTCACTGCGTCATTTA--AGC--GA---TAA 525
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