Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01582 and BPUM_0866
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_01582___yhcN.1.24716.seq
# -bsequence dna-align/BPUM_0866___yhcN.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01582___yhcN-BPUM_0866___yhcN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01582___yhcN-BPUM_0866___yhcN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01582___yhcN
# 2: BPUM_0866___yhcN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 329/655 (50.2%)
# Similarity: 329/655 (50.2%)
# Gaps: 224/655 (34.2%)
# Score: 836.0
#
#
#=======================================
BSNT_01582___ 1 ATGCTTGGAAAAAAACAAGTTCTTGCGTCTGTGCTTCTTATCCCTTTGCT 50
BPUM_0866___y 0 -------------------------------------------------- 0
BSNT_01582___ 51 TATGACTGGCTGCGGTGTGGCCGACCAAGGTGAGGGCAGACGTGATAATA 100
BPUM_0866___y 0 -------------------------------------------------- 0
BSNT_01582___ 101 ATGATG--TAAGAAATGTAAACTATCGAAA--------TCCGG------- 133
|||||| |||||||||.|..|||||...| |||.|
BPUM_0866___y 1 ATGATGAATAAGAAATGGATGCTATCTTTACTACTCGTTCCAGCATTGAT 50
BSNT_01582___ 134 --CCAATGACGATATGCGCAATGTA--AACAACC-GGGATAATGTTGA-- 176
|||.|| |||.|| ||| ||||||| ||| .|.|||
BPUM_0866___y 51 CACCACTG--GATGTG------GTATGAACAACCAGGG----CGATGAGC 88
BSNT_01582___ 177 ------CAACAATGTTAC-------TGATAATGTCA---ATAACAATAAC 210
.|||||||..|| |||.||||||| ||||.|||.||
BPUM_0866___y 89 GAAGAGGAACAATGAAACGACAGTATGAAAATGTCACATATAAGAATGAC 138
BSNT_01582___ 211 AATCGTGTAA------ATGA---CGATAAT--AACAACGACCGGAAACTC 249
|| |.|| | |||| .|||..| ||||.| .|.|||..||
BPUM_0866___y 139 AA-CATG--AGGCAGGATGAGCCAGATGTTCAAACACC--TCAGAAGGTC 183
BSNT_01582___ 250 GAGGTTGCTGATGAAGC-----AGCTGATAAAG-TAACAGACCTAAAAGA 293
.|.||.||.||..|||| |||| |..|| .||||..||| ||
BPUM_0866___y 184 AAAGTGGCAGACAAAGCGTCAGAGCT--TGTAGCCAACATGCCT----GA 227
BSNT_01582___ 294 AGT-AAAACATGCCGATGTCATTGTTGCTGGAAATCAAGCTTACGTTGCA 342
||| |||||| ||..|.||..|.|||.|.|||||..|.||.|..|||||.
BPUM_0866___y 228 AGTAAAAACA-GCGAACGTACTGGTTACAGGAAAGAATGCATTTGTTGCC 276
BSNT_01582___ 343 GTCGTTTTAACTAATG---GAA----ATAAAGGTGCAGTA----GA-AGA 380
| ||||| ||| ||||| .||.||| || |||
BPUM_0866___y 277 G----------TAATGCTTGAAGGCGATAAA--AGCGGTAATGTGACAGA 314
BSNT_01582___ 381 CAATTTGAAGAAAAAAATAGCCAAAAAGGTAAGATCTACTGA-CAAAAAC 429
..|||||||.||.|||||..|..|.||.||.|.|||.||.|| |||.||
BPUM_0866___y 315 TGATTTGAAAAAGAAAATTTCTGATAAAGTCAAATCAACAGATCAACAA- 363
BSNT_01582___ 430 ATTGATAATGTTTACGTTTCAGCTAACCCTGATTTTGTAGAGCGTATGCA 479
||.||.|||||.||.||.||.||.||.||.||.||.||.||.||.|||.|
BPUM_0866___y 364 ATCGACAATGTGTATGTCTCTGCCAATCCAGACTTCGTTGATCGAATGGA 413
BSNT_01582___ 480 AGAATATGGAAAGCGTATTCAAAAG-GGTGACCCAATCGCCGGATTATTT 528
||.||||||||||.|.||| |.||| ||.||.||.|||.|.|||||.||.
BPUM_0866___y 414 AGGATATGGAAAGAGAATT-AGAAGCGGAGAACCCATCTCAGGATTTTTC 462
BSNT_01582___ 529 GATGAATTTATACAAACTGTACAG-CGCGTATTCCCTAACCCTGAATAA- 576
||||||||||...||||.|| ||| ||.||.|| ||||||||.|
BPUM_0866___y 463 GATGAATTTACTGAAACAGT-CAGACGTGTCTT------CCCTGAATCAA 505
BSNT_01582___ 576 ----- 576
BPUM_0866___y 506 AATAG 510
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