Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01586 and BPUM_0871
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:05
# Commandline: needle
# -asequence dna-align/BSNT_01586___yhcS.1.24716.seq
# -bsequence dna-align/BPUM_0871___yhcS2.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01586___yhcS-BPUM_0871___yhcS2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01586___yhcS-BPUM_0871___yhcS2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01586___yhcS
# 2: BPUM_0871___yhcS2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 623
# Identity: 406/623 (65.2%)
# Similarity: 406/623 (65.2%)
# Gaps: 82/623 (13.2%)
# Score: 1213.0
#
#
#=======================================
BSNT_01586___ 1 GTGAAAAAAGT-TATTCCACT-ATTCATCATTGCTGCCGGCCTAGTGATC 48
.|| ||||||| ..||.|.|| |.| .|.||..|.|||||..|.|||.|
BPUM_0871___y 1 ATG-AAAAAGTGGCTTGCGCTGACT-GTGATGACAGCCGGGATTGTGCT- 47
BSNT_01586___ 49 GC-AGGCTATGGAGGCTTT---AAATTG-ATCGATACGAATATGAAAACG 93
|| .||| |||.||.|.| ||||.| ||| .||..||.|..||||.
BPUM_0871___y 48 GCTCGGC--TGGGGGATATGGCAAATCGCATC--AACTCATCTTCAAACA 93
BSNT_01586___ 94 GAACAGACACTAAAAGAAGCAAAACTTGCGGCTGAAAAGCCGCAGGAACC 143
|..||..||.||.|.|||||.|| |||
BPUM_0871___y 94 GCCCAATCATTAGACGAAGCGAA----------------------GAA-- 119
BSNT_01586___ 144 TTTGGGGACGAAAAATAGC-ACAGATCAAG------CAAAGAACAAAGCA 186
||.|| |.|| ||.||||||| |.||| |||||
BPUM_0871___y 120 -----GGTCG-----TGGCGACCGATCAAGGGATGTCCAAG----AAGCA 155
BSNT_01586___ 187 TCATTTAAGCCTGAGACCGGACAAGCGAGCGGCATTTTAGA-AATACCGA 235
.|||...|||||.|..||..||||....|||||..| || .||.||.|
BPUM_0871___y 156 --GTTTGCTCCTGAAATAGGTAAAGCCTCTGGCATCCT-GACGATTCCAA 202
BSNT_01586___ 236 AAATCAATGCAGAGCTTCCGATCGTGGAGGGCACCGATGCTAATGATTTA 285
||.|.||.|||||.||||||||.||.||.||.||.|||||..||||..|.
BPUM_0871___y 203 AATTAAAAGCAGACCTTCCGATTGTCGAAGGGACAGATGCGGATGACCTT 252
BSNT_01586___ 286 GAAAAAGGTGTCGGGCATTACAAGGACAGCTATTATCCTGATGAAAACGG 335
|.|||.||.||.||.||.|||||.|||||.||||||||.|||.||||.||
BPUM_0871___y 253 GCAAAGGGAGTAGGACACTACAAAGACAGTTATTATCCGGATCAAAATGG 302
BSNT_01586___ 336 ACAAATTGTGCTGTCAGGGCATCGGGATACCGTGTTTCGCCGGACGGGAG 385
|||.|||||.||.||.||.||.||.||.||.||||||||||||||.||.|
BPUM_0871___y 303 ACAGATTGTCCTTTCTGGTCACCGTGACACGGTGTTTCGCCGGACAGGCG 352
BSNT_01586___ 386 AGCTGGAAAAGGGGGATCGGCTCCG-----CATTCTCCTGT--CATATGG 428
|.||.||.|..||.||||.||| | || |||| |.|||||
BPUM_0871___y 353 AACTAGATATTGGAGATCAGCT--GAAAATCA-----CTGTGCCGTATGG 395
BSNT_01586___ 429 AGAATTCACATATGAAATTGTAAAAACAAAAATTGTCGATAAGGATGACA 478
.|||||.|.|||||||||...|.|.||.||||||||.|||.||.||||.|
BPUM_0871___y 396 TGAATTTATATATGAAATCACACATACGAAAATTGTTGATCAGCATGATA 445
BSNT_01586___ 479 CATCTATTATCACGCTCCAGCATGAAAAGGAAGAGCTGATTCTGACGACC 528
||||.||.||.|||.|.||..|||||||||||||||||||..|.|||||.
BPUM_0871___y 446 CATCCATCATTACGTTGCAAAATGAAAAGGAAGAGCTGATATTAACGACA 495
BSNT_01586___ 529 TGCTATCCGTTTTCA-TACGTCGGAAATGCCCCGAAGCGCTATATTATAT 577
|||||||| |||||| |.||||||.|||||.||..||||.||||||||||
BPUM_0871___y 496 TGCTATCC-TTTTCATTTCGTCGGCAATGCGCCAGAGCGGTATATTATAT 544
BSNT_01586___ 578 ATGGAAAACGAGTGACTTAA--- 597
|||.||||.|||||.||.||
BPUM_0871___y 545 ATGCAAAAAGAGTGTCTGAATAA 567
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