Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01592 and BPUM_0875

See Amino acid alignment / Visit BSNT_01592 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_01592___yhcW.1.24716.seq
#    -bsequence dna-align/BPUM_0875___yhcW.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01592___yhcW-BPUM_0875___yhcW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01592___yhcW-BPUM_0875___yhcW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01592___yhcW
# 2: BPUM_0875___yhcW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 695
# Identity:     490/695 (70.5%)
# Similarity:   490/695 (70.5%)
# Gaps:          61/695 ( 8.8%)
# Score: 1646.5
# 
#
#=======================================

BSNT_01592___      1 GTGATTAAAGCGTTAATTTTTGATTTTGACGGGCTTATTCTAGATACAGA     50
                     .||.|.||.|||.|.||.||||||||.|||||..|.|||.||||||||||
BPUM_0875___y      1 TTGGTAAAGGCGATTATATTTGATTTCGACGGATTAATTTTAGATACAGA     50

BSNT_01592___     51 AACACACGAATATGAGGTTCTTCAGGAAATATTTGAAGAGCACGGCTCAG    100
                     ||||||.||||||||||||.|.||.|||||.||||..|||||.|..||||
BPUM_0875___y     51 AACACATGAATATGAGGTTTTACAAGAAATGTTTGCGGAGCATGAATCAG    100

BSNT_01592___    101 TGCTGCCGCTATCTGTCTGGGGAAAGGTCATCGGAACTGC-TGCGGGTTT    149
                     ..|||||.||.|||||.|||||.||||||||.||.|| || .||.||.||
BPUM_0875___y    101 ATCTGCCTCTTTCTGTATGGGGCAAGGTCATTGGCAC-GCAGGCAGGCTT    149

BSNT_01592___    150 CCGGCCTTTTGAATATTTAGAAGAGCAGATCGGGAAAAAGCTGAACCATG    199
                     ...|||.|||||||||||.|||.|||||.|.|||||.|.||||.|.||||
BPUM_0875___y    150 TAAGCCATTTGAATATTTGGAAAAGCAGCTAGGGAAGACGCTGGATCATG    199

BSNT_01592___    200 AAGA-GCTCACACAATTGAGAAGAGAGCGGTTCGC--------CAAACGC    240
                      ||| .|||||       ||.|||..|..||||.|        |||| |.
BPUM_0875___y    200 -AGACACTCAC-------AGCAGATCGGCGTTCTCGTTTTCAACAAA-GA    240

BSNT_01592___    241 ATGGAA--ACAGAAAAAGCGAGACCTGGTGTCGAAGCGTATTT-GAATGC    287
                     || |||  || |||..|||.|||||||||||.|||||.||||| ||| ||
BPUM_0875___y    241 AT-GAAGGAC-GAATCAGCAAGACCTGGTGTAGAAGCTTATTTAGAA-GC    287

BSNT_01592___    288 GGCAAAGGATTTAGGCTTAAAAATAGGCCTTGCTTCCAGCTCTGATTATA    337
                     .||||||||..|.||..|.||.||.|||||||||||||||||.||.||||
BPUM_0875___y    288 AGCAAAGGAGCTCGGTATCAAGATTGGCCTTGCTTCCAGCTCAGACTATA    337

BSNT_01592___    338 AATGGGTGTCCGGCCATTTGAAGCAAATCGGCCTGTTTGATGATTTTGAA    387
                     ||||||||||.|..||..|.|||||.||.||.||.||.||..|.||||||
BPUM_0875___y    338 AATGGGTGTCTGATCACCTAAAGCAGATTGGTCTTTTCGACTACTTTGAA    387

BSNT_01592___    388 GTTATTCAAACGGCTGATGATGTGGAAGAGGTGAAGCCGAATCCTGAGCT    437
                     ..|||.|..|||.|.||||||||||||||.|||||.||.|||||.|||||
BPUM_0875___y    388 TGTATCCGCACGTCAGATGATGTGGAAGAAGTGAAACCAAATCCAGAGCT    437

BSNT_01592___    438 CTATTTATTGGCGGCAAA------GA-ACCTCGGGGTATCGCCAGCGGAA    480
                     .|||||       |||||      || .|.|.|||||...||||...||.
BPUM_0875___y    438 TTATTT-------GCAAACCGCACGATGCTTAGGGGTCGAGCCAAAAGAT    480

BSNT_01592___    481 TGTCTCGCGTTTGAGGATTCTGTCAATGGTTCGATTGCTGCGAAACGTGC    530
                     ||..|.||.||||||||||||||.|||||.||..|.|||||.|||||.||
BPUM_0875___y    481 TGCGTGGCATTTGAGGATTCTGTGAATGGATCAGTAGCTGCCAAACGAGC    530

BSNT_01592___    531 AGGAATGAAGTGTGTCATTGTCCCGAATAAAGTAACGGGCAC-CTTGATG    579
                     |||.|||||.|||||.||.||.||.||.|||||.|||.|||| |||.| .
BPUM_0875___y    531 AGGTATGAAATGTGTGATCGTTCCAAACAAAGTCACGAGCACGCTTCA-A    579

BSNT_01592___    580 TTTGAAGACTATGATCACAGGCTTGAATCAATGGCGGAAATGGA---GCT    626
                     ||||||||.||||||..|||..|.|||||.|||||.|||||.||   |||
BPUM_0875___y    580 TTTGAAGAATATGATGTCAGATTAGAATCCATGGCTGAAATCGAATTGCT    629

BSNT_01592___    627 CGCCCTATTGCTTGATCATC-TGAA-------CTCACAAAACTAG    663
                     |...|||||.|   ||||.| ||||       .|||..||     
BPUM_0875___y    630 CCAGCTATTCC---ATCAGCTTGAAAAAGAGGATCAGTAA-----    666


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