Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01600 and BPUM_0883

See Amino acid alignment / Visit BSNT_01600 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:06
# Commandline: needle
#    -asequence dna-align/BSNT_01600___glpK.1.24716.seq
#    -bsequence dna-align/BPUM_0883___glpK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01600___glpK-BPUM_0883___glpK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01600___glpK-BPUM_0883___glpK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01600___glpK
# 2: BPUM_0883___glpK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1527
# Identity:    1136/1527 (74.4%)
# Similarity:  1136/1527 (74.4%)
# Gaps:          66/1527 ( 4.3%)
# Score: 4204.5
# 
#
#=======================================

BSNT_01600___      1 ATG------GAAACGTACATTTTATCCTTAGATCAGGGGACGACAAGTTC     44
                     |||      ||||..||.|||.|..|.||||||||.|||||.|||||..|
BPUM_0883___g      1 ATGACAAAAGAAAAATATATTCTTGCATTAGATCAAGGGACAACAAGCAC     50

BSNT_01600___     45 AAGAGCGATTCTGTTTAATAAAGAAGGCAAAATTGTCCACTCTGCTCAAA     94
                     |||||||||..|.|||.||.|||||||||||||||..||..|.|||||.|
BPUM_0883___g     51 AAGAGCGATCTTATTTGATCAAGAAGGCAAAATTGCACATACAGCTCAGA    100

BSNT_01600___     95 AGGAATTTACACAATACTTCCCGCATCCTGGCTGGGTTGAGCATAATGCC    144
                     |||||||||..||||||||.|||.|.||.||||||||.||.||.|||||.
BPUM_0883___g    101 AGGAATTTAATCAATACTTTCCGAACCCAGGCTGGGTAGAACACAATGCA    150

BSNT_01600___    145 AATGAAATTTGGGGCTCTGTCCTCGCGGTTATCGCCTCAGTCATCTC---    191
                     ||||||||||||.|||||||.||            .||||||||.||   
BPUM_0883___g    151 AATGAAATTTGGAGCTCTGTTCT------------ATCAGTCATTTCAAC    188

BSNT_01600___    192 ---------TGAATCAGGAAT-----CAGCGCTTCTCAAATTGCCGGCAT    227
                              ||||||||||||     |||     .||||||.||.||.||
BPUM_0883___g    189 TGCTTTAATTGAATCAGGAATTGAAGCAG-----ATCAAATCGCTGGTAT    233

BSNT_01600___    228 CGGCATCACGAACCAGCGCGAGACGACGGTTGTGTGGGATAAAGATACAG    277
                     |||.||.|||||||||||.|||||..|||||||.|||||||||.||||||
BPUM_0883___g    234 CGGAATTACGAACCAGCGTGAGACAGCGGTTGTTTGGGATAAACATACAG    283

BSNT_01600___    278 GAAGTCCTGTCTATAATGCAATCGTTTGGCAGTCCAGACAGACGTCCGGC    327
                     |....||..|.||.|||||.||.|||||||||||.|||||.|||||.|||
BPUM_0883___g    284 GCGCACCAATTTACAATGCCATTGTTTGGCAGTCAAGACAAACGTCTGGC    333

BSNT_01600___    328 ATTTGTGAGGAACTTCGT-----GAAAAAGGATATAATGATAAATTCAGA    372
                     ||||||||.||     ||     |||.|||||.|.|||||.|..||.|||
BPUM_0883___g    334 ATTTGTGAAGA-----GTTAAAAGAACAAGGACACAATGAAACGTTTAGA    378

BSNT_01600___    373 AAAAAAACTGGGCTTTTAATCGATCCATACTTCTCCGGCACGAAGGTGAA    422
                     ||.|||||.||||||.|.||.|||.|.||.|||||.||.||.|||||.||
BPUM_0883___g    379 AATAAAACAGGGCTTCTCATTGATGCTTATTTCTCAGGTACAAAGGTAAA    428

BSNT_01600___    423 GTGGATTTTAGACAATGTGGAAGGCGCGAGAGAAAAAGCGGAAAAAGGCG    472
                     .|||||.|||||||||||.||.||.||..|.||.|||||.|||||.||||
BPUM_0883___g    429 ATGGATCTTAGACAATGTTGATGGTGCCCGTGAGAAAGCAGAAAATGGCG    478

BSNT_01600___    473 AGCTGCTGTTTGGAACGATTGATACGTGGCTCATTTGGAAAATGTCAGGC    522
                     |..|.||||||||.||.||||||||.|||||.||||||||.|||.|||||
BPUM_0883___g    479 ACTTACTGTTTGGTACAATTGATACTTGGCTGATTTGGAAGATGACAGGC    528

BSNT_01600___    523 GGAAAAGCGCATGTGACCGATTACTCCAATGCCTCAAGAACACTGATGTT    572
                     ||.|||.|.||.||.||.||||||||.|||||.|||||||||.|.|||||
BPUM_0883___g    529 GGTAAATCACACGTCACAGATTACTCTAATGCGTCAAGAACATTAATGTT    578

BSNT_01600___    573 TAATATTTACGATTTAAAATGGGACGATGAACTGCTCGACATTCTAGGCG    622
                     .||.|||||||||.|.||||||||.||.|||.|.||.||.||.||.||||
BPUM_0883___g    579 CAACATTTACGATCTGAAATGGGATGAAGAATTACTTGATATCCTTGGCG    628

BSNT_01600___    623 TACCGAAATCCATGCTCCCTGAAGTGAAGCCGTCCTCTCATGTGTATGCG    672
                     |||||...||.|||||.||.||.|||||.||.||.||.||..|.||||..
BPUM_0883___g    629 TACCGGCTTCAATGCTTCCAGAGGTGAAACCATCTTCACACATTTATGGT    678

BSNT_01600___    673 GAGACTGTTGATTATCACTTCTTCGGAAAAAATATCCCGATTGCGGGAGC    722
                     ||.||....||.|||||||||||.||.|.||||||.||||||||.|||||
BPUM_0883___g    679 GAAACAACAGACTATCACTTCTTTGGCAGAAATATTCCGATTGCAGGAGC    728

BSNT_01600___    723 GGCAGGCGACCAGCAGTCCGCATTGTTCGGCCAGGCATGCTTTGAAGAAG    772
                     .||.||.||.||||||.|.||.||.|||||.|||||.|||||||||||||
BPUM_0883___g    729 CGCGGGAGATCAGCAGGCTGCTTTATTCGGTCAGGCTTGCTTTGAAGAAG    778

BSNT_01600___    773 GCATGGGGAAAAACACATACGGCACAGGATGTTTCATGCTGATGAATACC    822
                     |.||||.|||.||||||||.||.|||||||||||||||.||||||||||.
BPUM_0883___g    779 GAATGGCGAAGAACACATATGGTACAGGATGTTTCATGTTGATGAATACA    828

BSNT_01600___    823 GGGGAAAAAGCAATTAAGTCCGAACATGGGCTTTTGACAACAATCGCTTG    872
                     |||||||||||.||||||||.||.|||||..|.||.||.||.||.||.||
BPUM_0883___g    829 GGGGAAAAAGCCATTAAGTCGGATCATGGTTTATTAACGACGATTGCATG    878

BSNT_01600___    873 GGGCATTGACGGAAAAG-TGAACTATGCGTTAGAAGGAAGCATTTTTGTC    921
                     ||||||||||||.|||| |||| |||||.|||||||||||.|||||.||.
BPUM_0883___g    879 GGGCATTGACGGCAAAGTTGAA-TATGCTTTAGAAGGAAGTATTTTCGTT    927

BSNT_01600___    922 GCAGGCTCTGCCATCCAGTGGCTTAGAGACGGTTTGAGAATGTTCCAGGA    971
                     ||.|||||.||.||.||.|||||..|.||.||..|.||||||||..|.||
BPUM_0883___g    928 GCTGGCTCAGCGATTCAATGGCTGCGTGATGGACTCAGAATGTTTAAAGA    977

BSNT_01600___    972 TTCATCGCTA---AGCGAATCTTATGCAGAAAAAGTGGATTCAACTGACG   1018
                        .|||..|   ||||||.||||||||||...|||.||.|||||.||.|
BPUM_0883___g    978 ---CTCGAAAGACAGCGAAGCTTATGCAGAGCGAGTTGAGTCAACAGATG   1024

BSNT_01600___   1019 GCGTGTATGTCGTTCCAGCATTTGTCGGACTGGGAACGCCTTACTGGGAC   1068
                     ||||.||.||||||||.|||||.||.||.||.||.||.||.||.|||||.
BPUM_0883___g   1025 GCGTATACGTCGTTCCGGCATTCGTTGGTCTAGGCACACCATATTGGGAT   1074

BSNT_01600___   1069 AGTGATGTGCGCGGTTCGGTTTTCGGCCTGACAAGAGGGACAACAAAAGA   1118
                     ||||||||..|.||..|.||.|||||..|.|||.|.||.||..|.|||||
BPUM_0883___g   1075 AGTGATGTCAGAGGCGCTGTATTCGGGTTAACACGCGGTACTTCTAAAGA   1124

BSNT_01600___   1119 GCACTTTATCCGTGCGACACTGGAGTCATTGGCTTATCAGACAAAAGATG   1168
                     |||||||.|||||||.||..|.||.|||.|.||||||||.||.|||||||
BPUM_0883___g   1125 GCACTTTGTCCGTGCAACGTTAGAATCACTTGCTTATCAAACGAAAGATG   1174

BSNT_01600___   1169 TGCTTGACGCAATGGAAGCAGATTCAAACATTTCATTAAAGACGCTTCGT   1218
                     ||.|.||.||.||||||...||||||||||||||||||||.||..|.|||
BPUM_0883___g   1175 TGTTAGATGCGATGGAAAAGGATTCAAACATTTCATTAAAAACATTGCGT   1224

BSNT_01600___   1219 GTAGATGGAGGAGCTGTGAAAAACAATTTCCTGATGCAGTTCCAAGGAGA   1268
                     ||.|||||.||||||||.||.||..|||||.|.|||...||||||.|.||
BPUM_0883___g   1225 GTTGATGGCGGAGCTGTAAAGAATGATTTCTTAATGGGCTTCCAAAGTGA   1274

BSNT_01600___   1269 CCTGTTGAATGTTCCTGTGGAGCGCCCGGAAATTAATGAAACGACTGCGC   1318
                     ..|..||.||||.|||||.|||||.||.||||||||||||||.||.||.|
BPUM_0883___g   1275 TTTACTGGATGTGCCTGTAGAGCGTCCAGAAATTAATGAAACTACGGCAC   1324

BSNT_01600___   1319 TTGGCGCGGCTTATTTGGCAGGTATCGCTGTGGGATTCTGGAAGGACCGT   1368
                     |.||.|||||.|||.|.||.||.||.||.||.||.||||||||.||||||
BPUM_0883___g   1325 TCGGTGCGGCCTATCTTGCGGGAATAGCAGTTGGCTTCTGGAACGACCGT   1374

BSNT_01600___   1369 TCTGAAATCGCGAACCAGTGGAATCTGGATAAACGGTTTGAGCCTGAATT   1418
                     ||.||.||.||.||.||.|||||.||.||.||.||.|||||.|||.|..|
BPUM_0883___g   1375 TCAGACATTGCAAAACAATGGAACCTTGACAAGCGCTTTGATCCTAAGAT   1424

BSNT_01600___   1419 AGAAGAAGAAAAACGAAATGAGCT--GTATAAA--GGCTGGCAAAAAGCC   1464
                     .|||||||..|..||   ||| ||  .||||.|  ||.|||.||||.||.
BPUM_0883___g   1425 GGAAGAAGGCAGCCG---TGA-CTCGTTATACAGCGGGTGGAAAAAGGCT   1470

BSNT_01600___   1465 GTGAAAGCAGCTATGGCTTTTAAATAA   1491
                     ||.|||||||||...|||||.||||||
BPUM_0883___g   1471 GTAAAAGCAGCTCAAGCTTTCAAATAA   1497


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