Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01607 and BPUM_0887

See Amino acid alignment / Visit BSNT_01607 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:07
# Commandline: needle
#    -asequence dna-align/BSNT_01607___yhcZ.1.24716.seq
#    -bsequence dna-align/BPUM_0887___yhcZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01607___yhcZ-BPUM_0887___yhcZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01607___yhcZ-BPUM_0887___yhcZ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01607___yhcZ
# 2: BPUM_0887___yhcZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity:     445/716 (62.2%)
# Similarity:   445/716 (62.2%)
# Gaps:         133/716 (18.6%)
# Score: 1257.0
# 
#
#=======================================

BSNT_01607___      1 ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAG-AAAGGGTCTGC     49
                     ||||.|.||||||||||.||||||||||||.||||.|| ||||||..||.
BPUM_0887___y      1 ATGAGAGTTGTCATTGCAGATGATCATCATATTGTGAGAAAAGGGCTTGT     50

BSNT_01607___     50 GTTTTTTCTTTGCC--ACCCAGGATGATATTGAAGTCGTCGGAGAAGCTG     97
                     ||||||.||   ||  ||.|||..|||..|||||.||||.||.||.|||.
BPUM_0887___y     51 GTTTTTCCT---CCAGACACAGCCTGACGTTGAAATCGTTGGTGAGGCTT     97

BSNT_01607___     98 CAACCGGAATAGAAGCTCTCCGTGTCA-TCGAA-----GAGACAAA----    137
                     |.|..|||..|||||          || |.|||     .||.||||    
BPUM_0887___y     98 CTAATGGAGAAGAAG----------CATTAGAAATTGTTAGGCAAACGCG    137

BSNT_01607___    138 GCCGGATCTTGTGCTAATGGATCTGTCTATGCCCGAGATGGACGGCATTC    187
                     |||.||..|.||.||.||||||||.||.|||||.|..|||.|.||||||.
BPUM_0887___y    138 GCCTGACATCGTTCTCATGGATCTATCAATGCCTGTAATGAATGGCATTG    187

BSNT_01607___    188 AAGCCATTAAAAAAGCAAT-ACAGC---AATTTCCGGATA--CGAATATC    231
                     |.||.|..|||.|   ||| || ||   ||.|.||.||||  ||     |
BPUM_0887___y    188 AGGCAACGAAACA---AATGAC-GCTGGAAATGCCTGATACCCG-----C    228

BSNT_01607___    232 ATTGTG---CTGACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCT    278
                     ||||||   |||||.|||||..|.|||.|.||..|.||.|||||.||..|
BPUM_0887___y    229 ATTGTGATCCTGACAAGCTATGCGGATAAAGATTATGTTATCCCAGCCAT    278

BSNT_01607___    279 TCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCCCGAGGAAT    328
                     |||.|||||.||.||.||.|||||..|.||||||  |.|||.|.||    
BPUM_0887___y    279 TCAAGCAGGGGCAAAAGCCTATCAGCTCAAGGAT--GTAGCACCAG----    322

BSNT_01607___    329 TGGTGAAAACAC--TAAGACAAGTGCATG-GTGGCGAATAC---AAGCTT    372
                         .|||||.|  ||.|||     |||| .||.||  |||   |||.|.
BPUM_0887___y    323 ----AAAAACTCCTTACGAC-----CATGATTGACG--TACAAAAAGGTA    361

BSNT_01607___    373 TCTA-CAGCTATT--ATGCCCCATGTGCTAACACATATGAAAAAT-----    414
                     .||| ||   |||  |||      ||       |||||.|..|||     
BPUM_0887___y    362 CCTATCA---ATTAGATG------GT-------CATATCACCAATTTTCT    395

BSNT_01607___    415 ----CAGCA------CGACCCGGAAAAAG---AAAAATACTA-TCAATTA    450
                         |||||      .||.||   |||||   ||||||...| |.|||.|
BPUM_0887___y    396 TGTGCAGCATTTGACTGAGCC---AAAAGAGCAAAAATGGGAGTTAATGA    442

BSNT_01607___    451 ACTAGA----------AGGGAAAAAGACGTTCTGACT-GAAATAGCGAAC    489
                     |  |||          ||.||...|||.| |||.|.| |||||.||.||.
BPUM_0887___y    443 A--AGAGCTGACCAATAGAGAGCGAGATG-TCTTATTCGAAATTGCAAAG    489

BSNT_01607___    490 GGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAAC    539
                     ||||||||||||||||||||.||..||.|||||||||||||.|||||.||
BPUM_0887___y    490 GGGAAAAGCAATAAAGAAATTGCCTCATCCTTGTTTATTTCTGAAAAGAC    539

BSNT_01607___    540 AGTAAAAACCCATGTATCGAATCTTTTAGCAAAACTTGAAGTGGCCGATC    589
                     .||.|||||.||.|||||..||.|.|||.||||.||.||..||||.||||
BPUM_0887___y    540 TGTCAAAACGCACGTATCTCATGTATTATCAAAGCTAGAGCTGGCAGATC    589

BSNT_01607___    590 GCACGCAAGCAGCGCTTTTCGCAGTGAAATAT------AATCTGAATGGA    633
                     |.||.|||||.||.||||..||||||.|.|||      |.||.|..|..|
BPUM_0887___y    590 GTACCCAAGCGGCTCTTTATGCAGTGGATTATCAAAAAAGTCAGCCTAAA    639

BSNT_01607___    634 GAGAT-CTCAAAATGA    648
                     |||.| ||..||    
BPUM_0887___y    640 GAGCTGCTATAA----    651


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