Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01611 and BPUM_0891
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:07
# Commandline: needle
# -asequence dna-align/BSNT_01611___yhdC.1.24716.seq
# -bsequence dna-align/BPUM_0891___yhdC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01611___yhdC-BPUM_0891___yhdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01611___yhdC-BPUM_0891___yhdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01611___yhdC
# 2: BPUM_0891___yhdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity: 225/410 (54.9%)
# Similarity: 225/410 (54.9%)
# Gaps: 112/410 (27.3%)
# Score: 614.5
#
#
#=======================================
BSNT_01611___ 0 -------------------------------------------------- 0
BPUM_0891___y 1 ATGAAAATGGATCGATCAGCAAAACATAAACAAAATATACATGAAAGTGA 50
BSNT_01611___ 1 -----ATGAAATCT---CTGCCGTA--------TACCATT-------GC- 26
||||.|| | |.||||.| |.||.|| ||
BPUM_0891___y 51 GATCAATGATAT-TATGCAGCCGAAATGGTGGGTGCCTTTTGTAGCGGCA 99
BSNT_01611___ 27 --GCTTCTTTTTTGCGGATTGATTATCGTGTCAATGGCTGCAA-AAGGTC 73
|.||.|.|||.||.|.||.||.||| || ..|||||| ||
BPUM_0891___y 100 ATGGTTTTGTTTGGCAGTTTCATGATC----CA--TCCTGCAACAA---- 139
BSNT_01611___ 74 ATTCAACGGACACAAACG-AGTCCGTTCAAAAGTGGGAACAG-CTTGCCT 121
||.||.|| ||| ||.|.|||.||||.|||||| || |||||.|
BPUM_0891___y 140 ATGCAGCG-------ACGCAGCCTGTTGAAAATTGGGAA-AGACTTGCGT 181
BSNT_01611___ 122 GGAGCAAAATT-CAGGATGAATATAAGGGCGCTTCATTTTCT----GATT 166
..| ||...|| ||.||.||||||.|.|||||..| ||| ||||
BPUM_0891___y 182 ACA-CAGCGTTGCAAGAGGAATATGAAGGCGCCGC----TCTAAACGATT 226
BSNT_01611___ 167 ATGCTTATATGGGGCGTACAGAGGTGAATGATCAGCAGACGAAAGATGTC 216
||...|||||.|||||||||.|.||.|||||..|.|||||.||.||||||
BPUM_0891___y 227 ATCAATATATCGGGCGTACACAAGTAAATGAAGATCAGACAAAGGATGTC 276
BSNT_01611___ 217 TTTCGGGTGACAGTCAGACAGAAAGATGA-CACTTTTT-CTGTTCGGGCC 264
|||||.||.||.|| ||..|||.|.|.| |||||||| |||..|..||.
BPUM_0891___y 277 TTTCGCGTCACCGT--GAAGGAAGGCTCAGCACTTTTTGCTGCGCATGCA 324
BSNT_01611___ 265 GAAGTCTATTTTCATCCGGTGACAAATCATATGATCAGCATCAACGTCTT 314
|||.||||||||||.|||.|.||...||||.||||.||.||.|||||.||
BPUM_0891___y 325 GAAATCTATTTTCACCCGATCACCGGTCATTTGATTAGTATTAACGTTTT 374
BSNT_01611___ 315 TAGGCTCTAA 324
..||||.|||
BPUM_0891___y 375 CCGGCTATAA 384
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