Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01622 and BPUM_0897
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01622___lytE.1.24716.seq
# -bsequence dna-align/BPUM_0897___lytE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01622___lytE-BPUM_0897___lytE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01622___lytE-BPUM_0897___lytE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01622___lytE
# 2: BPUM_0897___lytE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1113
# Identity: 578/1113 (51.9%)
# Similarity: 578/1113 (51.9%)
# Gaps: 387/1113 (34.8%)
# Score: 1572.5
#
#
#=======================================
BSNT_01622___ 1 ATGAAAAAGCAAATCATTACAGCTACGACAGCAGTTGT-TTTAGGATCGA 49
||||||||.|||.|.||.||||||.|.|..||||||.| .||.||| |||
BPUM_0897___l 1 ATGAAAAAACAATTGATCACAGCTGCAAGTGCAGTTCTACTTGGGA-CGA 49
BSNT_01622___ 50 CGTTATTTGCAGGAGCGGCATCTGCACAA--AGCATTAAGGTGAAAAAAG 97
|.||||||||.|||||.||.||.|||||| || |.||.||..||||||
BPUM_0897___l 50 CATTATTTGCCGGAGCTGCCTCAGCACAATCAG--TAAAAGTTCAAAAAG 97
BSNT_01622___ 98 GCGACACGTTATGGGATCTTTC-----------AAGAAAATACGACACAA 136
|.|||.| |||||| ||.||.|||.|||| |.
BPUM_0897___l 98 GTGACTC---------TCTTTCTGTTCTAGCGAAAAAATATAAGACA-AG 137
BSNT_01622___ 137 CGATCAGTAAAATTAAATCAGAGAACCACCTTCGTTCAGATATTATTTAT 186
|| |.||.||.|||||||||||.||..|.||....||..|||..||.|||
BPUM_0897___l 138 CG-TAAGCAAGATTAAATCAGACAATAAACTGAAATCTAATACGATATAT 186
BSNT_01622___ 187 GTGGGACAAACTTTATCGATTAA---------CGGCAA-------ATCTA 220
||.||||||||.||| ..|.||| |.|||| |.|.|
BPUM_0897___l 187 GTTGGACAAACGTTA-AAAGTAAATGGTACTGCCGCAAAAAAAACAACGA 235
BSNT_01622___ 221 CAAGTTCAAAAAGCAGCAGTTCTTCTTCCTCTTCTTCTACATAC-AAAGT 269
.||..||||||| |.|| .|| |||||
BPUM_0897___l 236 AAACATCAAAAA------------------------CAAC-GACTAAAGT 260
BSNT_01622___ 270 AAAGAGCGG-------GGACAGC--CT-------TTGGAAAATTTCA--- 300
||| ||||| || |||| || |||.||||..|.|
BPUM_0897___l 261 AAA-AGCGGCGTCAACGG-CAGCGACTCATAAAGTTGTAAAAGGTGATAC 308
BSNT_01622___ 301 ----------------AAAAAATACGGCATGACAATCAATGAACTGAAGA 334
|||||||||||||||||..|.||.||.|||||..
BPUM_0897___l 309 GTTATCTAAAATCGGCAAAAAATACGGCATGACCGTAAAAGAGCTGAAAT 358
BSNT_01622___ 335 AGCTGAATGGCTTAAAATCAGATTTGCTTCGTGTTGGACAAGTCCTGAAA 384
.|.|.|| ||||.|||.| ||| ||.
BPUM_0897___l 359 CGTTAAA-----TAAACTCAAA---------------ACA-------AAC 381
BSNT_01622___ 385 CTGAAAGGTTCAACTAGTT---CAAGCAGCTCCAGCTCATCAAAAGTGTC 431
|||| |||| |.|| ||| .||||..||.||| |||||
BPUM_0897___l 382 CTGA-----TCAA--AATTGGGCAA-AAGCTAAAGGTCA--AAAAG---- 417
BSNT_01622___ 432 ATCGTCTTCAACTTCTACTTATAAAGTGAAGAGCGGAGACAGCCTTTCTA 481
||.|||| |.||||||||||
BPUM_0897___l 418 ----------ACGTCTA---AAAAAGTGAAGA------------------ 436
BSNT_01622___ 482 AAATTGCGAGCAAATACGGCACTACGGTTAGCAAATTAAAAAGCTTAAAC 531
||| |||
BPUM_0897___l 437 ----------CAA------CAC---------------------------- 442
BSNT_01622___ 532 GGCTTAAAATCAGATGTAATCTATGTCAACCAAGTATTGAAGGTGAAAGG 581
|| |||||||.
BPUM_0897___l 443 --------------------CT--------------------GTGAAAGA 452
BSNT_01622___ 582 AACAAGCACAAGCAGCTCAAAACCTGCTTCATCTT----CATCGTCTTCA 627
|| ||.|||.| .|||.|||.|||| || |||||
BPUM_0897___l 453 AA-------AAACAGTT-----TCTGTTTCTTCTTTGAACA-CGTCT--- 486
BSNT_01622___ 628 AGCAGCAAAACGTCATCTACATCACTTAATGTGAGCAAGCTGGTTTCTGA 677
||.||.||..|.||
BPUM_0897___l 487 ------------------------------------AAACTTGTAGCGGA 500
BSNT_01622___ 678 TGCAAAAGCGTTAGTC-----GGAACGCCATACAAATGGGGCGGAACGAC 722
|||.|||||| | ||.||.|||||.|.||||||.||||||||
BPUM_0897___l 501 TGCTAAAGCG-----CACAATGGCACACCATATAGATGGGGTGGAACGAC 545
BSNT_01622___ 723 AACTTCC----GGCTTTGACTGCAGCGGATTCATTTGGTACGTACTGAAT 768
| || ||||||||.||||||||.||.||.|||||..|..|.||.
BPUM_0897___l 546 A----CCAAAGGGCTTTGATTGCAGCGGGTTTATGTGGTATATCATTAAC 591
BSNT_01622___ 769 AAACAAACAAGTGTGGGCAGA-------ACAAGC-ACTGCAGGATACTGG 810
||.||||.|| ||| ||||.| ||||.|||.|.||||
BPUM_0897___l 592 AAGCAAAAAA--------AGATTTCAAGACAAACAACTGAAGGTTTCTGG 633
BSNT_01622___ 811 AGTTCTATGAAGAGC--ATTGCCAGCCCGTCT------GTTGGTGATTTC 852
.|.||.|||||.||| || |.||| |||||.|||||.
BPUM_0897___l 634 GGATCAATGAAAAGCGTAT--------CTTCTCCAAAGGTTGGCGATTTT 675
BSNT_01622___ 853 GTCTTCTTCACAACATATAAATCCGGCCCTTCTCACATGGGGATTTACAT 902
||.|||||.||||||||||||||.||.||.|||||||||||..|.|||||
BPUM_0897___l 676 GTGTTCTTTACAACATATAAATCGGGTCCATCTCACATGGGTGTCTACAT 725
BSNT_01622___ 903 TGGAAACAAC-AGTTTCATTCATGCAGGATCTGACGGCGT-ACAAATCAG 950
|||.|||||| ||||| ||.|||||.|..|||||.||.|| || .|||||
BPUM_0897___l 726 TGGGAACAACAAGTTT-ATCCATGCTGCTTCTGATGGTGTGAC-GATCAG 773
BSNT_01622___ 951 CAGCCTGAA--CAACAGCTACTGGAAGCCTCGTTACCTCGGTGCGAAAAG 998
.....|||| || |||||.||||||||...||||||.||.|||||||.
BPUM_0897___l 774 TGATATGAATTCA--AGCTATTGGAAGCCGATTTACCTTGGAGCGAAAAC 821
BSNT_01622___ 999 ATT------CTAA 1005
||| .|||
BPUM_0897___l 822 ATTTGTGAAGTAA 834
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