Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00559 and BPUM_0899

See Amino acid alignment / Visit BSNT_00559 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:22
# Commandline: needle
#    -asequence dna-align/BSNT_00559.1.24716.seq
#    -bsequence dna-align/BPUM_0899.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00559-BPUM_0899.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00559-BPUM_0899.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00559
# 2: BPUM_0899
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 863
# Identity:     687/863 (79.6%)
# Similarity:   687/863 (79.6%)
# Gaps:          55/863 ( 6.4%)
# Score: 2921.0
# 
#
#=======================================

BSNT_00559         1 TTGAAGGCAGCACGATTTGAAGCTGTTCACGAATTGAAGGACCGTTATCC     50
                                                                       
BPUM_0899          0 --------------------------------------------------      0

BSNT_00559        51 GATT-ACGTGGCTGGTATGTATCGCCAAAGTGTCACGGTCAGGGTACTAT     99
                       || ||.|||||....||||||||||||||.|||||.||.|||||||||
BPUM_0899          1 --TTGACATGGCTCACCTGTATCGCCAAAGTATCACGATCGGGGTACTAT     48

BSNT_00559       100 AAATGGCGCAAGGCTCAAAGGTTTCGAATGGCAAGGCAACAGAGAGATCA    149
                     ||.|||||.|||..|||||.|.|||||||||.|.|.||.|.||.|||.||
BPUM_0899         49 AAGTGGCGTAAGAATCAAAAGATTCGAATGGAACGACAGCTGAAAGAACA     98

BSNT_00559       150 GATCATAAAAGAGCACATCATGGCGATTCATCATTCACGCCCTTTCTATG    199
                     .|.|.|||||||.|||||||||||.||||||||||||.|.||.|||||||
BPUM_0899         99 AACCCTAAAAGAACACATCATGGCCATTCATCATTCAAGACCCTTCTATG    148

BSNT_00559       200 GCTATCCTCGGATTACTGTCGCTTTAAAGAAAGAAGG-TTTCTGCGTCAA    248
                     |||||||||||.|.||..||||||||||||||||||| |||| .|.||||
BPUM_0899        149 GCTATCCTCGGGTGACAATCGCTTTAAAGAAAGAAGGATTTC-ACATCAA    197

BSNT_00559       249 CCATAAGCGTGTTTACAGATTGATGAGAGAGATGAACATCCACTCGATTA    298
                     ||||||||||||.|||||.|||||||.|||||||||||||||.||.||.|
BPUM_0899        198 CCATAAGCGTGTCTACAGGTTGATGAAAGAGATGAACATCCAATCAATCA    247

BSNT_00559       299 TTCGAAAAAAGCGTCGTTATTTTGGAAGAAAGGCATCGGTTGTCCTGCCA    348
                     ||||||||||||||||.||||||||||||.|.||.||.|||.|||..|||
BPUM_0899        248 TTCGAAAAAAGCGTCGGTATTTTGGAAGACAAGCTTCAGTTATCCATCCA    297

BSNT_00559       349 AACCGGCTTAACCGAGAATTTCAAACCAATCAGCCTAATCAGTTATATGT    398
                     ||..|..|.||||||.|||||.||||||||||....|||||||||||.||
BPUM_0899        298 AATAGATTAAACCGAAAATTTAAAACCAATCAATTCAATCAGTTATACGT    347

BSNT_00559       399 AACCGATATTACCTATATTGCTTGCGGACAACGATTCTATTATCTTTCTG    448
                     |||.||||||||||||||.||||||...||.|..||||||||||||||.|
BPUM_0899        348 AACTGATATTACCTATATCGCTTGCCAGCATCACTTCTATTATCTTTCAG    397

BSNT_00559       449 CAGTACAAGATCTTTACAACAATGAGGTTGTCGCATGGAAACTGTCAAAG    498
                     |..||||||||||.||.||||||||..||||||||||||||||||||||.
BPUM_0899        398 CTATACAAGATCTATATAACAATGAAATTGTCGCATGGAAACTGTCAAAA    447

BSNT_00559       499 CGAAATGATCTTGAACTGGTGATGAAAACAGTGGAAAGTTTAACAGCTCA    548
                     |||||||||||||||.||||.|||.|.|||.|.||.|||||.|||.|.||
BPUM_0899        448 CGAAATGATCTTGAATTGGTCATGGAGACATTAGAGAGTTTGACATCCCA    497

BSNT_00559       549 ACGGGATGTCCAAGGGGCCATTCTCCACTCTGATCAAGGATTCCAATACA    598
                     ||||||||||.||||.||..|.||.||.||.|||||||||||||||||||
BPUM_0899        498 ACGGGATGTCAAAGGAGCTGTACTTCATTCAGATCAAGGATTCCAATACA    547

BSNT_00559       599 CAACAAAAGCATATCAAAAGCGACTTGAAACCGTTGGTTTGAAGGGCAGC    648
                     |||||||||||||||||||||||||.||||.||||||||||||||||||.
BPUM_0899        548 CAACAAAAGCATATCAAAAGCGACTAGAAAACGTTGGTTTGAAGGGCAGT    597

BSNT_00559       649 CATTCCCGTAAGGGAAACTGCCTGGATAACGCCTGTATCGAATCATTTTT    698
                     ||||||||.|.||||||||||||.|||||.||||||||||||||||||||
BPUM_0899        598 CATTCCCGAAGGGGAAACTGCCTAGATAATGCCTGTATCGAATCATTTTT    647

BSNT_00559       699 CTCGCACCTCAAAACAGAGAATACATACTTTTCTTCATGCCAAACTGAAA    748
                     |||.||.||||||||||||||.||.|||||||||||.||.|||||.||||
BPUM_0899        648 CTCCCATCTCAAAACAGAGAACACTTACTTTTCTTCGTGTCAAACGGAAA    697

BSNT_00559       749 AAGAGCTCCACAAAAGCATTAAAGATTACATCCAGTTCTATAATCACGAA    798
                     |||||||.||.||||||||..||||||||||.||.||||||||||||||.
BPUM_0899        698 AAGAGCTTCATAAAAGCATAGAAGATTACATTCAATTCTATAATCACGAT    747

BSNT_00559       799 CGATTCCAGAAAAAATTAAACCAGTGTGCTCCGGTAGAATACCGTAACAC    848
                     .|||||||||||||||||||||||||.||||||||||||||||||.||||
BPUM_0899        748 AGATTCCAGAAAAAATTAAACCAGTGCGCTCCGGTAGAATACCGTCACAC    797

BSNT_00559       849 ACTGGTTGCTTAG    861
                     |||||..||||||
BPUM_0899        798 ACTGGCAGCTTAG    810


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