Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01641 and BPUM_0904
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:08
# Commandline: needle
# -asequence dna-align/BSNT_01641___yhdP.1.24716.seq
# -bsequence dna-align/BPUM_0904___yhdP.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01641___yhdP-BPUM_0904___yhdP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01641___yhdP-BPUM_0904___yhdP.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01641___yhdP
# 2: BPUM_0904___yhdP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity: 988/1399 (70.6%)
# Similarity: 988/1399 (70.6%)
# Gaps: 131/1399 ( 9.4%)
# Score: 3420.5
#
#
#=======================================
BSNT_01641___ 1 TTGGACATAGTGAATTTGATTTTAGTTGCTGTTTTAATCGCCCTGACGGC 50
|||||||||||.|||||..||.||||||||.|..|.||.||..|.||.||
BPUM_0904___y 1 TTGGACATAGTTAATTTACTTATAGTTGCTTTGCTTATAGCTTTAACCGC 50
BSNT_01641___ 51 ATTTTTCGTGGCATCTGAGTTTGCCATTATCAGAATCAGAGGCTCACGGA 100
|||||||||.|||||.||||||||.||.||..|..|.|||.|||||.|.|
BPUM_0904___y 51 ATTTTTCGTTGCATCAGAGTTTGCGATCATTCGCTTAAGAAGCTCAAGAA 100
BSNT_01641___ 101 TCGATCAGCTGATCGCGGAAGGAAATAAAGCAGCAATAGCCGTAAAAAAA 150
|.||||||.|.|||||.|||||.||||||.|||||.|.||.||.||..|.
BPUM_0904___y 101 TTGATCAGTTAATCGCAGAAGGTAATAAAACAGCAGTTGCTGTCAAGCAT 150
BSNT_01641___ 151 GTGACCACGCATCTTGATGAATATTTATCTGCGTGTCAGCTCGGAATTA- 199
||.|||||.||.||||||||.|||.|.||.||.|||||||||||.||||
BPUM_0904___y 151 GTCACCACTCACCTTGATGAGTATCTGTCGGCCTGTCAGCTCGGTATTAC 200
BSNT_01641___ 200 CATTGACTTCCATCGG-ATTAGGGGTT--TTAGGTGAATCAACGATCG-- 244
|||| ||..||.|.|| ||| |||| |||||.|||..|||.||.|
BPUM_0904___y 201 CATT-ACCGCCCTTGGTATT---GGTTGGTTAGGGGAAGAAACCATTGCG 246
BSNT_01641___ 245 -AAAGGCT-GCTTCACCCGCTTTTCGTCCAAATGAACGTTCCAGGTTCCC 292
|.|.||| ||| ||.|||||.|| .||.|..||.| ||||
BPUM_0904___y 247 CACATGCTGGCT----CCACTTTTTGT-----AGAGCTATCAA---TCCC 284
BSNT_01641___ 293 T-----------TTCACATGTCATATCGTTTATTTTTGCGTATGCCATTA 331
| |||...||||| |.||||||.||||||.|...||||
BPUM_0904___y 285 TCAATCAGCTAGTTCGATTGTCA---CTTTTATTATTGCGTTTAGTATTA 331
BSNT_01641___ 332 TCACGTTCTTACACGTTGTTGTCGGAGAACTTGCACCTAAGACAGTCGCT 381
|.|||||.|||||||||||.||.||||||||||||||.||.|||.||||.
BPUM_0904___y 332 TGACGTTTTTACACGTTGTGGTTGGAGAACTTGCACCAAAAACACTCGCC 381
BSNT_01641___ 382 ATCCAAAAGGCGGAAGC-AGTGTCTATGCTGTTTGCGAAACCGC---TGA 427
||.||||||||.| ||| |||.|||.|.||.|||||.|.||||| |||
BPUM_0904___y 382 ATTCAAAAGGCAG-AGCAAGTATCTCTTCTTTTTGCTAGACCGCTCATGA 430
BSNT_01641___ 428 TTTGGTTTTAC----CGCATCGCGTTCCCATTCATTTGGCTTTTGAACAA 473
|| |||||| .| || ||||||.||.||.|||.|.||.||...
BPUM_0904___y 431 TT---TTTTACAAAGTG-AT---GTTCCCGTTTATCTGGGTATTAAATGG 473
BSNT_01641___ 474 TTCCGCACGGTTATTGACCAAAGCATTTGGCCTGGAGACCGTTTCAGAAA 523
.||.||.||.||.||.||.|||||.||.||.||..||...|||||.||..
BPUM_0904___y 474 ATCTGCTCGTTTGTTAACAAAAGCGTTCGGTCTTCAGCAAGTTTCTGAGC 523
BSNT_01641___ 524 ACGAACTGGCTCACTCAGAAGAAGAGCTGCGAATCATTTTGTCTGAAAGC 573
|.||..||||.|||||.||||||||..||||.||.|||||.||.||.|||
BPUM_0904___y 524 ATGACATGGCGCACTCTGAAGAAGAATTGCGGATTATTTTATCAGAGAGC 573
BSNT_01641___ 574 TATAAAAGCGGTGAAATCAACCAATCAGAGTTTAAATATGTGAATAAAAT 623
|||||||||||.|||||.|||||.||.||.||.||||||||.||||||||
BPUM_0904___y 574 TATAAAAGCGGCGAAATTAACCAGTCTGAATTCAAATATGTAAATAAAAT 623
BSNT_01641___ 624 CTTTGAATTTGACGACAGGCTCGCGAAAGAAATTATGATTCCGCGGACCG 673
.|||||||||||.|||.|.||.||||||||||||||||||||.||.||||
BPUM_0904___y 624 TTTTGAATTTGATGACCGTCTGGCGAAAGAAATTATGATTCCTCGTACCG 673
BSNT_01641___ 674 AAATTGTCAGCCTTCCGCATGATATCAAGATTTCTGAAATGATG-----G 718
||.|||||||..|.||.||||||||.|..|||...||||||.|| |
BPUM_0904___y 674 AAGTTGTCAGTTTCCCTCATGATATTACCATTGAGGAAATGCTGAAAGTG 723
BSNT_01641___ 719 ACATCATTCAGATTGAAAAATATACCCGCTACCCTGTGGAAGAGGGCGAT 768
|| || ||.||||.||||||||.||.||.||..|.|||||.||||||
BPUM_0904___y 724 AC--CA---AGGTTGAGAAATATACACGTTATCCAATTGAAGATGGCGAT 768
BSNT_01641___ 769 AAAGATAACATTATCGGGGTTATTAACATTAAAGAAGTGCTGACAGCCTG 818
||||||||.||.||.||.|||.|.|||||.|||||.||.||.|||||.||
BPUM_0904___y 769 AAAGATAATATGATTGGTGTTCTGAACATCAAAGAGGTTCTCACAGCTTG 818
BSNT_01641___ 819 CATAAGCGGTGAGGTATCTGT--------TGATTCCACCATTTCTCAATT 860
.||.||||||||| ||| |||| ||.|||....|.||
BPUM_0904___y 819 TATTAGCGGTGAG-----TGTTCTACAAGTGAT---ACGATTGAAAAGTT 860
BSNT_01641___ 861 CGTCAACCCGATCATTCATGTCATTGAATCTGCGCCGATCCAAGACCTGC 910
.|||||.||.||.||||||||.||.||| .|||.|||...||.||.
BPUM_0904___y 861 TGTCAATCCAATTATTCATGTGATCGAA-----ACCGTTCCTGTACATGA 905
BSNT_01641___ 911 TT-----GTCAAAATGCAAAAAGAGAGGGTCCACATGGCCATTTTGTCTG 955
|| .||||||||||....||..|.||.||||||||.|||||.||.|
BPUM_0904___y 906 TTTATTGCTCAAAATGCAGCGCGAACGTGTACACATGGCGATTTTATCAG 955
BSNT_01641___ 956 ATGAATACGGCGGTACTGCCGGGCTTGTGACGGTTGAGGACATCATTGAG 1005
|||||||.||||||||.||.||.||||||||.||.||.||||||.||||.
BPUM_0904___y 956 ATGAATATGGCGGTACAGCTGGTCTTGTGACTGTAGAAGACATCCTTGAA 1005
BSNT_01641___ 1006 GAAATTGTCGGTGAAATCCGCGACGAATTTGATATTGATGAAATTAGCGA 1055
|||||.|||||||||||.||.||.|||||.||||||||||||||.|.|||
BPUM_0904___y 1006 GAAATCGTCGGTGAAATTCGTGATGAATTCGATATTGATGAAATCAACGA 1055
BSNT_01641___ 1056 AATCCGCAAAATCGGCGAAGGCCATTATATTCTTGACGGAAAAGTGTTAA 1105
|.|.||.|||.|.||.||||.||||||.||..||||.|||||.||..||.
BPUM_0904___y 1056 AGTGCGTAAACTTGGAGAAGACCATTACATCTTTGATGGAAAGGTTCTAG 1105
BSNT_01641___ 1106 TTGACCAAGTAAACGACCTGC---TAGGCATTCATTTAGAGAACGAAGAA 1152
|||||||||| |.|||||| ||||.|..||..|.||.||.||||||
BPUM_0904___y 1106 TTGACCAAGT---CAACCTGCTTTTAGGTACGCAGCTTGATAATGAAGAA 1152
BSNT_01641___ 1153 GTCGACACAATCGGCGGCTGGTTCCTTACTCAAAAATACGATGTTGAAAA 1202
|||||.||.||.||||||||||||||||||||.|||||.||.|||||.||
BPUM_0904___y 1153 GTCGATACGATTGGCGGCTGGTTCCTTACTCAGAAATATGAAGTTGAGAA 1202
BSNT_01641___ 1203 AGATGATTCCATCATC--GAAGAGGGCTGCGAATTCATCATTAATGAAAT 1250
|.||||..|||| || |||.|.||||..|||||.||.|||||||||.|
BPUM_0904___y 1203 AAATGACACCAT--TCGTGAACAAGGCTATGAATTTATTATTAATGAAGT 1250
BSNT_01641___ 1251 TGACGGCCACCACGTGGCATATATTGAAGTGAAAAAGCTTCAA-GA---- 1295
.||.||.|||||.||||.||||||.|||||.|||||| ||.|| ||
BPUM_0904___y 1251 CGATGGACACCATGTGGTATATATCGAAGTTAAAAAG-TTAAATGAACAG 1299
BSNT_01641___ 1296 --AGAAGAA-CTTCTGGAGACAGC------TAACCAGCAGGAAGCATAA 1335
||.|||| |..|||.|||..|| |||
BPUM_0904___y 1300 TTAGCAGAAGCCGCTGAAGAAGGCGCTTCTTAA---------------- 1332
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