Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01649 and BPUM_0910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01649___yhdW.1.24716.seq
# -bsequence dna-align/BPUM_0910___ugpQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01649___yhdW-BPUM_0910___ugpQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01649___yhdW-BPUM_0910___ugpQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01649___yhdW
# 2: BPUM_0910___ugpQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity: 471/801 (58.8%)
# Similarity: 471/801 (58.8%)
# Gaps: 153/801 (19.1%)
# Score: 1157.5
#
#
#=======================================
BSNT_01649___ 1 TTGTACATCATTGCCCATCGCGGAGCATCCGGCTAC-GCTCCGGAAAATA 49
.||||.||.|||||.|||.|.|||.||||..|| || ||.||.|||||||
BPUM_0910___u 1 GTGTATATTATTGCGCATAGAGGATCATCAAGC-ACTGCCCCAGAAAATA 49
BSNT_01649___ 50 CGATTGCCGCATTTGACCTTGCGGTGAA--AATGAATGCAGA-TATGATC 96
|.||||||||||||||..|.||.||..| ||.| |||||| ||| ||.
BPUM_0910___u 50 CAATTGCCGCATTTGATTTAGCTGTTCAGCAAGG--TGCAGATTAT-ATT 96
BSNT_01649___ 97 GAACTGGATGTCCAGCTTACAAAAGACAGGCAGATTGTTGTGATACACGA 146
|||.|.|||||.|||||.|||...|||..|||..|.||.|||||.||.||
BPUM_0910___u 97 GAATTAGATGTACAGCTCACATTGGACCAGCATGTCGTCGTGATCCATGA 146
BSNT_01649___ 147 TGACAGGGTTGACCGAACAACAAAC-GGATCGGGCTTTGTTAAGGATTTT 195
.||.|..||.||||||||.||.||| |||.| |||||.||.||....|.|
BPUM_0910___u 147 CGATACTGTAGACCGAACGACGAACGGGAAC-GGCTTAGTCAAAAGCTAT 195
BSNT_01649___ 196 AC-CTTGGAGGAAT----TGCAAAAACTCGATGCAGGAAGCTGGT----- 235
|| |||| || |..|||||||.||.|||||||||||||
BPUM_0910___u 196 ACACTTG-----ATCAGCTAAAAAAACTGGACGCAGGAAGCTGGTTTGAC 240
BSNT_01649___ 236 --ACGGTCCCGCTTTTCAAGGA--GAGCGTATTCCGACCCTGGAAGCGGT 281
||.||.| |.|| ||.||.|||||.||..|..|||...|
BPUM_0910___u 241 CAACAGTAC---------ACGAATGAACGAATTCCAACATTACAAGAAAT 281
BSNT_01649___ 282 GCTCAAGCGCTACCACAAAAAAATCGGCCTTTTAATTGAACTAAAAGGCC 331
.||..|..|.|||..|.|.|..|||||..|.||.|||||..|.|||..||
BPUM_0910___u 282 TCTTGAAAGATACAGCCAGAGGATCGGGATATTGATTGAGATCAAACACC 331
BSNT_01649___ 332 ---ATCCGTCTCAAGTCGGAATTGAAGAAG--AGGTGGGACAGCTATTAG 376
|.|.| ||..|.||||||||| ||| ||.| |.|.|| ||.|
BPUM_0910___u 332 CAAAACGG---CAGATAGGAATTGAA-AAGGCAGTT--GCCCGC-ATCA- 373
BSNT_01649___ 377 GGCAA----TTTTCTTTTTCTATCAATAATATTGTTCAATCCTTTCA-GT 421
.||| |||.|.|.||||..|.|||..||..|||||||.|||.| |.
BPUM_0910___u 374 -TCAACCGGTTTGCCTATTCTCGCCATATGATGATTCAATCTTTTGATGA 422
BSNT_01649___ 422 TC---CGCTCCGTC-------CAAAGGTTCCGCGAGCTTTATCCTTCGAT 461
|| |.|| || |||||.||.||| .|||||..|
BPUM_0910___u 423 TCATGCACT---TCAAAGAATCAAAGCTTTCGC--------CCCTTCTCT 461
BSNT_01649___ 462 TCCGACAGCGGTCATTACAAGGCCCAACTTTGGCAT----GCTGTCCAGA 507
||..|||||..|.||||.||.|||.|| .|||| .|||.| ||
BPUM_0910___u 462 TCGAACAGCTTTGATTATAAAGCCTAA----TGCATTTAAACTGAC--GA 505
BSNT_01649___ 508 AATCAGA----TGAAGGCCTTCCGCTCTTTTGCAAACTATGTCAATATAA 553
|| ||| |.|.|||.|.|.||||.|||||.||.|...|.|||||.|
BPUM_0910___u 506 AA--AGAAAGTTAATGGCATACAGCTCGTTTGCCAATTGCCTTAATATGA 553
BSNT_01649___ 554 AATACACACGGCTCAACCGTCTGATGATCGGCT---CCG--TCCA----- 593
|..|.|||..|.|||| |.||||.| ||.| ||| ||||
BPUM_0910___u 554 AGAAGACAATGATCAA----CAGATGGT-GGATAGACCGCATCCACTCAT 598
BSNT_01649___ 594 TAAAAATGGCTTAAACATATTTGCATGGACTGTCAACAATCAAAAGACAG 643
|....|||| |..|.|||..|||||||||.||..|||||||.||||
BPUM_0910___u 599 TCGGGATGG-----ATGTGTTTATATGGACTGTGAAAGATCAAAAAACAG 643
BSNT_01649___ 644 CGG-------CAAA----ATTACAAGCCATGGGCGTGGACGGCATCGTTA 682
|.| |||| ||| .|||.||.||..||||.|
BPUM_0910___u 644 CTGATCGGATCAAAAAATATT-----------CCGTTGATGGTGTCGTGA 682
BSNT_01649___ 683 CAGATTACCCG-GATTTCATCATAAAGGATGGCAAACATGAAAATATATA 731
|.|||.||||| .||||..|| |||||| |.|.||||
BPUM_0910___u 683 CGGATCACCCGCCATTTTTTC-TAAAGG-----AGAAATGA--------- 717
BSNT_01649___ 732 G 732
BPUM_0910___u 717 - 717
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