Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01655 and BPUM_0915
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:09
# Commandline: needle
# -asequence dna-align/BSNT_01655___yheN.1.24716.seq
# -bsequence dna-align/BPUM_0915___yheN1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01655___yheN-BPUM_0915___yheN1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01655___yheN-BPUM_0915___yheN1.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01655___yheN
# 2: BPUM_0915___yheN1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 991
# Identity: 538/991 (54.3%)
# Similarity: 538/991 (54.3%)
# Gaps: 278/991 (28.1%)
# Score: 1262.0
#
#
#=======================================
BSNT_01655___ 1 ATGCGAC-----------AAACGAGAGGAGAAGCTTCTCCTTC------- 32
||||.|| |||| ||| |.|||||
BPUM_0915___y 1 ATGCAACGGGTTACGAAAAAAC------AGA-----CACCTTCAAACACG 39
BSNT_01655___ 33 -TGCAGTTTCGCTTGCTTTTAAA----TTTGCAAGTTTAGCAGTTTTATG 77
||| ||||.|.||| .||| |||||| |.||
BPUM_0915___y 40 ATGC---------TGCTCTCAAAGGCGATTG---GTTTAG-----TGAT- 71
BSNT_01655___ 78 TGTG---CTG-----CTTTTGCTTATGGTGATTTTGGGTTAT-TCCAACA 118
|.|| ||| ||||| ||| ||||||.||| ||.|
BPUM_0915___y 72 TCTGTCACTGATCCTCTTTT--TTA-------TTTGGGATATATCTA--- 109
BSNT_01655___ 119 GTTCAACGAAAGCAA-----AGGAAG----TCACTGTCA---CAACTAAC 156
|||.||| |||.|| ||| |.|| |||.|..|
BPUM_0915___y 110 --------AAACCAATATGCAGGCAGCAGATCA--GCCAGCTCAAATGTC 149
BSNT_01655___ 157 GGACAGC-------TTCGAGATGAGAAGGA-AAGCCT-TAAGCTGAAAAA 197
.|..||| ||||||| .|.|||.| |||.|| .|||| ||||
BPUM_0915___y 150 TGCGAGCAGTGAATTTCGAGA-CACAAGCACAAGTCTGAAAGC---AAAA 195
BSNT_01655___ 198 CGACTCCCCCGATCTGCTGAT------AAAACAT---CTGCAGA------ 232
|.|||| ||||||| .||||.|
BPUM_0915___y 196 ---------------GATGATTCTACAAAAACATTAGATGCACATTTTAA 230
BSNT_01655___ 233 --------CAAAGCAGGACATG--GGAGATAAAACGGTTTACTTAACCTT 272
||||..| ||||| ..||||.|||||.|.|..||||||||
BPUM_0915___y 231 GATCAACCCAAACAA--ACATGTAACAGATCAAACGATCTTTTTAACCTT 278
BSNT_01655___ 273 CGATGACGGCCCGTCAGCCTTTAC----AACCCGCTTGCTCGATGTACTG 318
.|||||.||.||||||||| || ||||.|||| .|.|||||.||
BPUM_0915___y 279 TGATGATGGTCCGTCAGCC---ACATCAAACCAGCTT-TTGGATGTGCT- 323
BSNT_01655___ 319 AAAAGCGC-TGATGTAAAAGCGACGTTTTTTATGCTGTCACCGCGGATGA 367
.||||||| |.|.|||||.||.||.||.||.|||||....||||.|||.|
BPUM_0915___y 324 CAAAGCGCATCAAGTAAAGGCCACATTCTTCATGCTCGGGCCGCAGATTA 373
BSNT_01655___ 368 ACGAA-TTCAAGCAGGCTGTGAAAAGA--GCAGAAAAGGAAGGCCACGCA 414
|.||| .||..||| |||||||||||| .||..|| |||||.||
BPUM_0915___y 374 AGGAACATCCGGCA-GCTGTGAAAAGACTTCATCAA--GAAGGTCA---- 416
BSNT_01655___ 415 CTCGGTT-----TACATGGCGTTACCCACAAT----AACAGATTG-TTCT 454
||.||| |.|||||..|.||.||..|| ||| | ||.|
BPUM_0915___y 417 -TCAGTTAGGGCTTCATGGGATCACACATGATGTGAAAC-----GTTTTT 460
BSNT_01655___ 455 ATCAAACACCTACATCTCCGCTAAAAGAAATGCAGGA-----GGCGC--- 496
||||||.|..|...|||||..|.||.||.|||.|.|| .||||
BPUM_0915___y 461 ATCAAAAAAGTGATTCTCCCGTCAATGAGATGAAAGAAGATCAGCGCATT 510
BSNT_01655___ 497 GTGACACGCTGCAGGACATTACAGG---TTATAAAACCGC-TCTTGTCAG 542
.|| |||.|.| ||||||| .|||| ||| .|||||.||
BPUM_0915___y 511 TTG----GCTTCTG----TTACAGGAGAGTATA----CGCACCTTGTGAG 548
BSNT_01655___ 543 AACGCCCTACGGAAGCAAGCCGTCA--CTAACC--CCCTCACAAATCCGC 588
.||.||.||.||.||| |||..|| .||||| .|..||.||| ||
BPUM_0915___y 549 GACACCTTATGGCAGC--GCCCCCAATTTAACCGATCAGCAAAAA---GC 593
BSNT_01655___ 589 AATCTTGAGA-AAGACGGTTTTGTGTACTGGGATTGGACGATTGACAGCA 637
|...||.|.| ||.|.||.|||.|.||||||||||||||.||||||||..
BPUM_0915___y 594 ACGTTTAAAACAAAAAGGCTTTATCTACTGGGATTGGACAATTGACAGTC 643
BSNT_01655___ 638 TGGACTGGAAATACCGAAATTCAAAGTATGTGACGGCCGTGTTAGAGCAG 687
|.|||||||||||...||..|||||.|||||..|.|..||.||..|.|||
BPUM_0915___y 644 TTGACTGGAAATATAAAAGCTCAAAATATGTACCAGAAGTTTTGAATCAG 693
BSNT_01655___ 688 CT-----TG--------AAAATAT------GGAACAAAGCTCTTCAGGCC 718
|| || ||||.|| |.|.|||||.||
BPUM_0915___y 694 CTGCAAGTGCTAGAGACAAAACATCCAAAAGAACCAAAGATC-------- 735
BSNT_01655___ 719 GCCCGAATGTGATTCTCATGCATGATCTTCCCGCCACCGTAAACGCGCTG 768
||..|.|||||.||||..||.||.||.|.|||
BPUM_0915___y 736 -----------ATCTTAATGCACGATCAGCCAGCGACAGCAAA------- 767
BSNT_01655___ 769 CCGGTACTAA----------TCAATAAATTAAAAGAAAAAGGCTATTCCT 808
.||||.| |||...|..||||||..||.||||||.|.|
BPUM_0915___y 768 ---ATACTTAAACAGTTTGCTCACACAGCTAAAAGCCAAGGGCTATACAT 814
BSNT_01655___ 809 TCGGAGTGTTAGAGGACACAATGGTTCCTGTTCATGAATAA 849
|.|.|||..|.||.||.||||||...||..|.||..|||||
BPUM_0915___y 815 TTGAAGTTCTTGATGAAACAATGAAGCCGCTGCAGCAATAA 855
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