Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01662 and BPUM_0917

See Amino acid alignment / Visit BSNT_01662 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_01662___nhaX.1.24716.seq
#    -bsequence dna-align/BPUM_0917___nhaX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01662___nhaX-BPUM_0917___nhaX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01662___nhaX-BPUM_0917___nhaX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01662___nhaX
# 2: BPUM_0917___nhaX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 559
# Identity:     349/559 (62.4%)
# Similarity:   349/559 (62.4%)
# Gaps:          83/559 (14.8%)
# Score: 1024.5
# 
#
#=======================================

BSNT_01662___      1 GTGAGAAGGA----------TGTTCCATGCTGACCGTATCATTGTTGCGT     40
                     .||| |||||          ||||.||.|||||.||.||..|.|||||||
BPUM_0917___n      1 TTGA-AAGGAATGAGGACATTGTTTCAAGCTGATCGGATGGTCGTTGCGT     49

BSNT_01662___     41 TTGACGGAAGTGAAAATAGTAAGAAAGCGCTTCAGACA-GCCATTGATCT     89
                     ||||.|||..||||.|.||||||||||| .||.|.|.| ||.||.|.|.|
BPUM_0917___n     50 TTGATGGACATGAAGACAGTAAGAAAGC-ATTAAAAAAGGCAATCGCTTT     98

BSNT_01662___     90 TGCTAAAACCGTAAATGCCGCTATTACCGTCGCCCATTCACATGATATGA    139
                     .||.||||||.|..|||||....|.|||.|.|||.||.|||||||| .|.
BPUM_0917___n     99 AGCCAAAACCCTGCATGCCAAACTGACCATTGCCTATGCACATGAT-GGC    147

BSNT_01662___    140 AAGACAATCAGACCG-----TCATCGACC-CGCCCA--GAC--CCGCAGC    179
                     ||..|||.|||||.|     |.||..||| ||||||  |||  .||.|||
BPUM_0917___n    148 AAATCAAGCAGACAGGTGTTTGATGCACCTCGCCCAATGACTGGCGGAGC    197

BSNT_01662___    180 TGAGGCAAGCTATATCAGCGGAGGCATGACAAG-----------------    212
                     |         ||||||.|.||.||.|||.| ||                 
BPUM_0917___n    198 T---------TATATCGGTGGCGGTATGGC-AGACCTTCAAACACCCCCT    237

BSNT_01662___    213 -----TGTTCCTGATCCGCTGATATCGGATGTAACATCA-----CCTGAG    252
                          |||.|||.||            |||| ||||.||     |||   
BPUM_0917___n    238 GTGTATGTACCTCAT------------GATG-AACAACAAAGTCCCT---    271

BSNT_01662___    253 CCAATGATCTATGAAGACCGTACGGAAGAAGTCATCGCCGAAGCAAGAAT    302
                         ||||.|.||||||.|.|||.|||||.|||.|.||.|||||||||||
BPUM_0917___n    272 ----TGATTTTTGAAGATCATACAGAAGAGGTCGTTGCAGAAGCAAGAAT    317

BSNT_01662___    303 GATGCTGAATGAACAGCAGGCAGATGGAGATATCGATATATTAGAAGGCG    352
                     |.|..|.|||||..|||||...||.|..|..||.||.||..|.||.||.|
BPUM_0917___n    318 GCTTTTAAATGAGGAGCAGTTTGAAGCTGCCATTGAAATTGTTGAGGGGG    367

BSNT_01662___    353 ATCCGGCTGAATCAATTATCGAGCATGC-AAACCGCATTTCTGCCGATAT    401
                     |.||.||.|||.||||||||||..|||| .||..| |||||.||.||..|
BPUM_0917___n    368 AACCAGCAGAAGCAATTATCGAATATGCTGAAGAG-ATTTCAGCAGACCT    416

BSNT_01662___    402 GATCGTAACCGGAAGCAGAGACCAAAACAGGCTGAAAAAGCTAATATTCG    451
                     .|||||.|..|||..|.|.|.|||||.|||..|||||||..|..|.||.|
BPUM_0917___n    417 CATCGTCATGGGAGCCCGTGGCCAAAGCAGATTGAAAAAAATGCTCTTTG    466

BSNT_01662___    452 GAAGTGTAAGTGAAAAGCTTTCAGCGAAATCGGATATACCCGTCCTGATT    501
                     |.||||||||||||||..|.|||.|.|||||.||||||||.||.||.|||
BPUM_0917___n    467 GTAGTGTAAGTGAAAAATTATCATCAAAATCAGATATACCTGTGCTCATT    516

BSNT_01662___    502 GTAAAGTGA    510
                     |||||.|.|
BPUM_0917___n    517 GTAAAATAA    525


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