Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01682 and BPUM_0930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:11
# Commandline: needle
# -asequence dna-align/BSNT_01682___hemZ.1.24716.seq
# -bsequence dna-align/BPUM_0930___hemZ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01682___hemZ-BPUM_0930___hemZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01682___hemZ-BPUM_0930___hemZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01682___hemZ
# 2: BPUM_0930___hemZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1579
# Identity: 1087/1579 (68.8%)
# Similarity: 1087/1579 (68.8%)
# Gaps: 152/1579 ( 9.6%)
# Score: 3611.0
#
#
#=======================================
BSNT_01682___ 1 TTGCAAATTAAAATAGAAGG-----CATACATGATGACCGCCTGCATCGG 45
.|||.||||..|||..|||| || |||||.||..|.|||||.
BPUM_0930___h 1 ATGCGAATTTTAATTAAAGGGCTGTCA-----GATGATCGATTTCATCGC 45
BSNT_01682___ 46 CCTCTGCAAAATATTGCAAATTTGTTTTATGAAG-------AGTGCGAGC 88
||.||....|||||.||.|||||.|||.|.|||| ||||| .|.
BPUM_0930___h 46 CCGCTTGTCAATATAGCCAATTTATTTGAAGAAGATAGTGAAGTGC-TGT 94
BSNT_01682___ 89 TTGCGTAT---GGCGGAGAGGAGCCCGCAGAT---TTTGTCAT-TTCTTT 131
||| || ||.|.|..||| |||| ||...||| .|.|||
BPUM_0930___h 95 TTG---ATCCAGGTGAATTGGA------AGATGGCTTCACCATGGTGTTT 135
BSNT_01682___ 132 AGCGTTGTCACAAACGGATGAGCATGTGACGGTTTCGGGAGAAGTGAAGG 181
||| ||..| .||.||..|||..||| |||||.|
BPUM_0930___h 136 AGC--TGGGA-----AGAAGAAAATGGAACG------------GTGAAAG 166
BSNT_01682___ 182 GAACTGGCATAAA-----GGAACAG-CATACAAAATTC--TTTTC----- 218
.|.|||| .||.| |||.||| ||| ||..|.|| |||||
BPUM_0930___h 167 CATCTGG-TTATATCGCTGGATCAGACAT-CACTAGTCGTTTTTCGCGAG 214
BSNT_01682___ 219 ---TCCC----GGCATGAATGAAAAAGAAGC-TTTTAAGCAAGTGAAAAA 260
|||| ||..||||.| |.|||.||| .|..||||||.|.|||||
BPUM_0930___h 215 ACGTCCCAGAGGGTTTGAACG-ACAAGGAGCGCTGGAAGCAAATCAAAAA 263
BSNT_01682___ 261 CACAATTTCT-TATGTGTATCTCAATCTTCTTCAGGCGCATACGGGCATT 309
||| |.|.|| |.|||.|||.|..||||.|||||||.|.|.||.||.||.
BPUM_0930___h 264 CAC-AGTGCTGTCTGTTTATTTACATCTGCTTCAGGAGTACACAGGAATG 312
BSNT_01682___ 310 ACGCAGAAGTGGGGAATCCTCACAGGAATCCGGCCCACAAAGCTGCTTCA 359
|||||.||||||||.||.||||||||.||.||.||.|||||..|.|||||
BPUM_0930___h 313 ACGCAAAAGTGGGGTATTCTCACAGGGATACGTCCTACAAAATTACTTCA 362
BSNT_01682___ 360 TAAAAAACTGCAAAG-CGGAATGTCCAAGGAGCAAGCGCATGCTGAGTTG 408
|||||..||| |.|| .||.|||.|.|||||..|.||||||||.|..||
BPUM_0930___h 363 TAAAATGCTG-AGAGAAGGTATGACAAAGGAAGATGCGCATGCCGCATT- 410
BSNT_01682___ 409 AAAAAA----GACTATTTAATTCATGATGAAAAAATC-ATGCTAATGCAG 453
||| ||.|||||.|||||||||||||||||| || .|.||||||
BPUM_0930___h 411 ---AAAGCGTGATTATTTGATTCATGATGAAAAAATCGAT-TTGATGCAG 456
BSNT_01682___ 454 GAAATTGTTGACCGTCAGCTGGCGGCAGTTCCGGATTTGTACCGAGTAA- 502
||.|||||.|||||||||||....||..||||||||.|||| |.|
BPUM_0930___h 457 GAGATTGTGGACCGTCAGCTTCAAGCGATTCCGGATCTGTA-----TGAT 501
BSNT_01682___ 503 ----AGGATGAAGTCAGCATTTATATCGGCATTCCGTTCTGCCCGACAAA 548
||.|.|||||.||.||||||||.||.|||||.||.|||||.|||||
BPUM_0930___h 502 CTTCAGCAGGAAGTAAGTATTTATATTGGTATTCCTTTTTGCCCAACAAA 551
BSNT_01682___ 549 ATGCGCGTATTGCACATTCCCTGCGTACGCTATCCAAGGACAGGCGGGCA 598
||||||.||||||||.||.|||||.||.||.||..|||||||.||.||.|
BPUM_0930___h 552 ATGCGCTTATTGCACGTTTCCTGCTTATGCAATTAAAGGACAAGCCGGAA 601
BSNT_01682___ 599 GAGTCGGCTCATTCCTATGGGGACTGCATTACGAAATGCAGAAGATTGGT 648
||||.||..|.||..|.|..||.||||||||.||||||||.||.||||||
BPUM_0930___h 602 GAGTGGGGACGTTTTTGTTTGGTCTGCATTATGAAATGCAAAAAATTGGT 651
BSNT_01682___ 649 GAATGGCTGAAGGAGCAT--GATGTTAAGGTTACAACCATTTACTTTGGC 696
||.|||||.||.||.||| || |.||.||.||||||.|||||||||||
BPUM_0930___h 652 GACTGGCTAAAAGAACATCGGA--TCAAAGTGACAACCGTTTACTTTGGC 699
BSNT_01682___ 697 GGCGGGACGCCGACAAGCATTACAGCGGAGGAGATGGATCTGCTGTATGA 746
||.||.||||||||.||.||.||.|||||.||.||||||.||||||||||
BPUM_0930___h 700 GGTGGTACGCCGACGAGTATCACGGCGGAAGAAATGGATTTGCTGTATGA 749
BSNT_01682___ 747 AGAAATGGTCCGCTCCTTCCCGGATGTGAAAAACATTCGTGAGATTACGG 796
|||||||...|||||.|||||.|||||||||.|.||.||.||..|.||.|
BPUM_0930___h 750 AGAAATGTATCGCTCGTTCCCTGATGTGAAACATATACGGGAAGTGACTG 799
BSNT_01682___ 797 TGGAGGCCGGTCGTCCTGACACGATTACAGAAGAAAAACTCGCCGTTTTA 846
|.||.|||||.||||||||.||||||.|....||.||.||.|..||.|||
BPUM_0930___h 800 TCGAAGCCGGGCGTCCTGATACGATTTCGCCTGATAAGCTAGAGGTGTTA 849
BSNT_01682___ 847 AACAAATATGACATTGATCGGATCAGCATCAATCCGCAATCCTACGAAAA 896
|||..||||.|.||||||||.||.||.||||||||.|||||.||.||.||
BPUM_0930___h 850 AACCGATATCATATTGATCGAATTAGTATCAATCCACAATCGTATGAGAA 899
BSNT_01682___ 897 CGAAACGCTAAAGGCGATCGGGCGGCACCATACGGTTGAAGAGACCATTG 946
.|||||.||.||.||.||.||.|||||.||||..||.|||||.||.||||
BPUM_0930___h 900 TGAAACACTGAAAGCCATTGGCCGGCATCATAGTGTAGAAGAAACGATTG 949
BSNT_01682___ 947 AGAAATATCATCTGTCACGCCAGCACGGCATGAATAATATTAACATGGAC 996
|.||.|||||..|.|||.|..||.|.||.||||||||.|||||.||||||
BPUM_0930___h 950 AAAAGTATCACTTATCAAGAGAGTATGGTATGAATAACATTAATATGGAC 999
BSNT_01682___ 997 TTGATTATTGGTTTGCCTGGGGAAGGTGTGAAGGAGTTTAGGCA-CAGTC 1045
||.||||||||||||||.||.|||||..|.|||||.|| .|| ||.||
BPUM_0930___h 1000 TTAATTATTGGTTTGCCAGGAGAAGGGCTCAAGGAATT---CCAGCATTC 1046
BSNT_01682___ 1046 TTTCAGAA----ACAGAAAAACTGATGCCGGAATCCCTTACCGTTCATAC 1091
.|| ||| ||.|||.||||.|.|||.|||||..|.||.||.|||||
BPUM_0930___h 1047 CTT--GAATAAGACTGAAGAACTTAAGCCTGAATCGTTAACTGTGCATAC 1094
BSNT_01682___ 1092 TCTTTCATTTAAACGGGCGTCAGAAATGACGAGAAACAAGCATAAGTACA 1141
.||.||.||||||.|||||||.||.||||||.|.||.||..|.||.||..
BPUM_0930___h 1095 GCTCTCCTTTAAAAGGGCGTCTGAGATGACGCGTAATAAAGACAAATATC 1144
BSNT_01682___ 1142 AAGTTGCCGGCAGGGAAGAGGTTTCTCAAATGATGGAAGACGCGGTAGCC 1191
||||.||.|.|.|.|||||..|..|.|..||||||||.||.||.||.||.
BPUM_0930___h 1145 AAGTAGCAGACCGAGAAGAAATCACACGTATGATGGATGAAGCAGTTGCT 1194
BSNT_01682___ 1192 TGGACGAAAGAGCATGGGTACGTGCCTTATTATTTATACCGCCAGAAAAA 1241
||||||||||..||||..||....||||||||||||||..|.||.|||||
BPUM_0930___h 1195 TGGACGAAAGCACATGACTATCACCCTTATTATTTATATAGACAAAAAAA 1244
BSNT_01682___ 1242 CATTCTT-GGAAACCTTGAAAACGTCGGATACTCTTTGCCGGGACAAGAA 1290
|| |||| ||.|||||||||||.|||||||||||.||....|||||.|||
BPUM_0930___h 1245 CA-TCTTAGGGAACCTTGAAAATGTCGGATACTCATTAGATGGACAGGAA 1293
BSNT_01682___ 1291 AGCATCTACAACATTATGATTATGGAAGAGGTGCAGACGATTATTGGCAT 1340
||..|.||.||.|||||.|||||||||||.||||||||.||.|||||.||
BPUM_0930___h 1294 AGTTTATATAATATTATTATTATGGAAGAAGTGCAGACAATCATTGGGAT 1343
BSNT_01682___ 1341 CGGCTGCGGCGCTGCTAGTAAATTTATTGATCGGGATACAGGGAAAATCA 1390
.||.|||||.|||||||||||.||.|||||||.|..|.||||.|||||.|
BPUM_0930___h 1344 TGGATGCGGTGCTGCTAGTAAGTTCATTGATCCGCGTTCAGGAAAAATTA 1393
BSNT_01682___ 1391 CGCATTTTGCGAATCCGAAAGATCCGAAATCGTACAATGAGCGCTTCGAG 1440
||||.|.|||.|||||.||||||||.||||||||.|||||.||.|..||.
BPUM_0930___h 1394 CGCAGTATGCCAATCCAAAAGATCCAAAATCGTATAATGACCGTTATGAA 1443
BSNT_01682___ 1441 CACTACACGGACGAAAAAATCAAATATTTAGAG-CA-GATT--------- 1479
|||||.||.||.||.|||||..|||.|.|.||| || .|||
BPUM_0930___h 1444 CACTATACTGAGGAGAAAATTCAATTTCTTGAGTCATTATTTGTTCCTCA 1493
BSNT_01682___ 1480 --TTTGAGAAGACGACAAAGCAGCACTGA 1506
|||.|
BPUM_0930___h 1494 CGTTTAA---------------------- 1500
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