Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01688 and BPUM_0933

See Amino acid alignment / Visit BSNT_01688 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:11
# Commandline: needle
#    -asequence dna-align/BSNT_01688.1.24716.seq
#    -bsequence dna-align/BPUM_0933.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01688-BPUM_0933.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01688-BPUM_0933.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01688
# 2: BPUM_0933
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 203
# Identity:     122/203 (60.1%)
# Similarity:   122/203 (60.1%)
# Gaps:          31/203 (15.3%)
# Score: 280.5
# 
#
#=======================================

BSNT_01688         1 ATGGCTGA----TTATTTCCTTACCGTATTTGATCCTTCGGGGAACACGC     46
                     |||| .||    .||.||..|.||.||||||||.||.||.||..|.||..
BPUM_0933          1 ATGG-AGAAGACATACTTTTTAACTGTATTTGACCCATCCGGTGAGACTT     49

BSNT_01688        47 TGGTAAACGAGCAATTCGAGGCAGAACA-----TGAAGAAGCGGCAAAAA     91
                     |..||||.||..||.|     ||.||||     |||.|||..|||  |||
BPUM_0933         50 TATTAAATGAAAAAAT-----CACAACAGATAGTGATGAAAAGGC--AAA     92

BSNT_01688        92 CGCAT--GGTGAAGCC--CTCTTAAAAGAAAAAGAGC--TTCA--TAGTC    133
                     .|.||  |||  .|||  |.||||..||   ||.|||  |.||  .|| |
BPUM_0933         93 GGAATTAGGT--CGCCATCGCTTATTAG---AACAGCAATACACGAAG-C    136

BSNT_01688       134 ATACTCATCGTTTAGTCAATGCAGCCGGAAAGCTGATTTTGTTTCACGGA    183
                     ||.||||||||.|.||..|||..||.||.||||||.||||.|||.|..|.
BPUM_0933        137 ATTCTCATCGTCTCGTTGATGATGCAGGCAAGCTGCTTTTATTTGAACGT    186

BSNT_01688       184 TGA    186
                     |.|
BPUM_0933        187 TAA    189


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