Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01694 and BPUM_0936
See
Amino acid alignment /
Visit
BSNT_01694 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_01694___yhaM.1.24716.seq
# -bsequence dna-align/BPUM_0936___yhaM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01694___yhaM-BPUM_0936___yhaM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01694___yhaM-BPUM_0936___yhaM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01694___yhaM
# 2: BPUM_0936___yhaM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity: 670/966 (69.4%)
# Similarity: 670/966 (69.4%)
# Gaps: 96/966 ( 9.9%)
# Score: 2453.0
#
#
#=======================================
BSNT_01694___ 0 -------------------------------------------------- 0
BPUM_0936___y 1 ATGGCTAAAGGGATCATGACCTATGATGTCGGCGAACAAGTTGACCTGCA 50
BSNT_01694___ 1 ----TTGATTAAATCCTCGACGAAAGGGATTGCAAGCAATGGAAAACCGT 46
||.||||||||.||.||.|||||||||||.||.|||||.|||||.|
BPUM_0936___y 51 TTTATTAATTAAATCATCTACTAAAGGGATTGCGAGTAATGGCAAACCAT 100
BSNT_01694___ 47 TTCTGACGCTGATGCTGCAAGACC--AGTCAGGCGATATTGAAGCGAAGC 94
||.|.|||.|.||.||.|||||.| ||| ||.||||||||.|||||..
BPUM_0936___y 101 TTTTAACGTTAATTCTTCAAGATCAAAGT--GGAGATATTGAGGCGAAAT 148
BSNT_01694___ 95 TGTGGGATGCCAAGCAAAGTGATGAAGTGACCTATGCGCCGCAGACGATT 144
|.||||||||.|||||.|.|||||||...||||||||..|.||.||.|||
BPUM_0936___y 149 TATGGGATGCGAAGCAGAATGATGAACAAACCTATGCCGCACAAACCATT 198
BSNT_01694___ 145 GTCAAGGTCGTCGGCGATGTTCATCATTATCGCGGGCGCACCCAGCTGAA 194
||.|||||.||.||||||.|||||||||||||||||.|.|..||||||||
BPUM_0936___y 199 GTGAAGGTAGTTGGCGATATTCATCATTATCGCGGGAGGAATCAGCTGAA 248
BSNT_01694___ 195 GCTAAGAAATATCAGACCGGT------AAGCGAGCAAGAAAACGTCAAT- 237
.||.||.|||||..|.||.|| ||..||||| |||
BPUM_0936___y 249 ACTTAGGAATATACGCCCTGTTGCTGAAAATGAGCA----------AATT 288
BSNT_01694___ 238 ---ATAGATGATTTTTTAGAAACCGCGCCGATTCCGAAAAATGAAATGAT 284
||.|||||||||.|.|||||.||.||.|||||.||..||||.|||||
BPUM_0936___y 289 CGAATTGATGATTTTCTCGAAACAGCTCCTATTCCAAAGCATGATATGAT 338
BSNT_01694___ 285 GGATACCATCACTCAATATATATTTGAAATGAAAAATCCGAATATCCAGC 334
||||||.||.|..||||||||.|||||.||||||||.||.|||||.||||
BPUM_0936___y 339 GGATACAATTATGCAATATATTTTTGATATGAAAAACCCTAATATACAGC 388
BSNT_01694___ 335 GAATCACAAGGTTTTTGGTTAAAAA------ACACGAA---GCTGAGTTT 375
|..|||||||...||||.|.||||| |||.||| |||
BPUM_0936___y 389 GTGTCACAAGACATTTGCTGAAAAAATATGGACAGGAATTCGCT------ 432
BSNT_01694___ 376 ATGGATTATCCGGCGGCTACGAAAAACCACCATGAGTTTGTCTCAGGTTT 425
||.|||||.||.||.||.||||||||.||.||.|||||.||.|||.|
BPUM_0936___y 433 ---GACTATCCAGCAGCGACAAAAAACCATCACGAATTTGTTTCTGGTCT 479
BSNT_01694___ 426 GGCGTATCATGTTGTCTCTATGCTGAACCTGGCGAAAGCAATAGCAGATT 475
.||.|||||.||.||.||.||||||.|..||||.|||.||||.|..|||.
BPUM_0936___y 480 TGCTTATCACGTAGTGTCCATGCTGCATTTGGCTAAATCAATTGTGGATC 529
BSNT_01694___ 476 TATATCCTTCTCTTGATCGTGATCTGCTTTACGCCGGTGTTATCCTGCAT 525
|||||||.||..|.|||||.|||||..|.||..|.||..|.||.||.|||
BPUM_0936___y 530 TATATCCATCATTAGATCGAGATCTTTTATATTCAGGCATCATTCTTCAT 579
BSNT_01694___ 526 GATCTTGGAAAAGTGAAGGAGCTGTCCGGCCCTGTTTCCACTTCATATAC 575
|||.|.||||||||.||.|||||.||.|||||.||.||.||..|.|||||
BPUM_0936___y 580 GATTTAGGAAAAGTCAAAGAGCTTTCAGGCCCAGTCTCAACCACCTATAC 629
BSNT_01694___ 576 GGTTGAAGGCAATTTGCTCGGCCATATTTCCATCATGGTGACAGAGCTTT 625
|||.|||||.|||||..|.||.|||||.||.||.|||||||||||..||.
BPUM_0936___y 630 GGTGGAAGGGAATTTAATTGGTCATATATCAATTATGGTGACAGAAATTG 679
BSNT_01694___ 626 CAAAAGCGGCTGAGGAGCTTCAAATCGATTCTGAAGAGGTGTTAATTCTT 675
|.|||||.|||||.||||||...||.|||||.|||||..|.||||||||.
BPUM_0936___y 680 CGAAAGCTGCTGAAGAGCTTGGGATTGATTCAGAAGAAATTTTAATTCTA 729
BSNT_01694___ 676 CAGCATTTGATTTTGAGTCACCACGGCAAAGCAGAATGGGGCAGCCCAAA 725
|||||.||..|..|.|||||.|||||.||||..||.|||||.|||||.||
BPUM_0936___y 730 CAGCACTTAGTACTAAGTCATCACGGAAAAGGTGAGTGGGGAAGCCCGAA 779
BSNT_01694___ 726 ACCGCCGATGGTGAAAGAAGCGGAAATTCTTCACTATATAGACAATCTGG 775
|||.||.||||||||.|||||.||||||||.||||||||.||.|||.|.|
BPUM_0936___y 780 ACCACCAATGGTGAAGGAAGCCGAAATTCTCCACTATATTGATAATTTAG 829
BSNT_01694___ 776 ATGCAAAAATGAATATGATGGACAGAGCGCTTGAACGCGTGAAGCCGGGC 825
||||.||.||||||||||||||..|.||||||||.|..||||||||.||.
BPUM_0936___y 830 ATGCGAAGATGAATATGATGGATCGTGCGCTTGAGCATGTGAAGCCAGGA 879
BSNT_01694___ 826 GAGTATACTGAACGTGTATTTGCACTGGAAAACCGTTCCTTTTATAAACC 875
||.|||||.||||||.|.|||||..|.||.||.|||||.|||||||||||
BPUM_0936___y 880 GAATATACAGAACGTATTTTTGCGTTAGAGAATCGTTCATTTTATAAACC 929
BSNT_01694___ 876 GACATTTCATAAATAA 891
.||.|||||..|.|||
BPUM_0936___y 930 AACTTTTCACGAGTAA 945
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.