Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01698 and BPUM_0938

See Amino acid alignment / Visit BSNT_01698 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:12
# Commandline: needle
#    -asequence dna-align/BSNT_01698___prsA.1.24716.seq
#    -bsequence dna-align/BPUM_0938___prsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01698___prsA-BPUM_0938___prsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01698___prsA-BPUM_0938___prsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01698___prsA
# 2: BPUM_0938___prsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 914
# Identity:     633/914 (69.3%)
# Similarity:   633/914 (69.3%)
# Gaps:          64/914 ( 7.0%)
# Score: 2027.5
# 
#
#=======================================

BSNT_01698___      1 ATGAAGAAAATCGCAATAGCAGCTATCACTGCTACAAGCATCCTCGCTCT     50
                     |||||.|||||.||..||||||||.|.|||||....||..|..|..||||
BPUM_0938___p      1 ATGAAAAAAATGGCTTTAGCAGCTGTAACTGCAGTTAGTGTTTTAACTCT     50

BSNT_01698___     51 CAGTGCTTGCAGCAGCGGCGACAAAGAAGTCATCGCAAAAACAGACGCAG    100
                     ..|.||.|||||.|||||.||.|||||.||||||||||.||||.|..|||
BPUM_0938___p     51 TGGCGCATGCAGTAGCGGTGATAAAGATGTCATCGCAACAACAAAATCAG    100

BSNT_01698___    101 GCGATGTAACAAAAGGCGAGCTTTACACAAACATGAAGA---AAACAGCT    147
                     |.|||||.|||||||..||||||||.||||...|.||||   ||.|||.|
BPUM_0938___p    101 GAGATGTCACAAAAGAAGAGCTTTATACAACTCTTAAGAAACAAGCAGGT    150

BSNT_01698___    148 GGCGCAAGCGTACTGACACAGCTAGTGCAAGAAAAAG-TATTG--GACAA    194
                     ||.| |.||.|  |.|..|..||.||.|||.||||.| |.|||  |||  
BPUM_0938___p    151 GGAG-ATGCTT--TAAATCTACTTGTTCAACAAAAGGTTCTTGCTGAC--    195

BSNT_01698___    195 GAAGTATAAAGTTTCGGATAAAGAAATTGACAACAAGCTGAAAGAATACA    244
                      ||.||.|||||.||.||||||||||||||.||.||..||.|||||||.|
BPUM_0938___p    196 -AAATACAAAGTATCTGATAAAGAAATTGATAAGAAAATGGAAGAATATA    244

BSNT_01698___    245 AAACG-CAGCTTGG---CGATC------AATATACTGCCCTCGAAAAGCA    284
                     |||.| || |||||   .||||      ||.| |||.|     ||.|..|
BPUM_0938___p    245 AAAAGACA-CTTGGTGAAGATCGTTTAAAACA-ACTTC-----AAGATGA    287

BSNT_01698___    285 ATATGGCAAGGATTACCTGAAAGAACAAGTAAAATATGAATTGCTGACAC    334
                     ||.|||.||.||||||.|.|||||.|||||.||||||||..|||||||.|
BPUM_0938___p    288 ATTTGGAAAAGATTACATCAAAGATCAAGTGAAATATGAGCTGCTGACTC    337

BSNT_01698___    335 AAAAAGCGGCTAAAGATAACATCAAAGTAACAGATGATGAAATTAAAGAA    384
                     ||||.||.||.||||.||||||||||.|.||.|||.|.|||.|.||||..
BPUM_0938___p    338 AAAAGGCTGCCAAAGCTAACATCAAAATCACTGATAAAGAAGTAAAAGCG    387

BSNT_01698___    385 TACTGGGAAGGCTTAAAAGGCCAGATTCGCGCAAGCCACATCCTTGTCGC    434
                     ||.|..||.|.|.|||||||..|.||.||||||||||||||.|||||.||
BPUM_0938___p    388 TATTACGATGACCTAAAAGGGAAAATCCGCGCAAGCCACATTCTTGTAGC    437

BSNT_01698___    435 TGACAAAAAGACAGCTGAGGAAATAGAGAAAAAGCTGAAAAAAGGCGAGA    484
                     |||.||.||.||||||||.|||.|.||.||.||..|..|.|||||.||.|
BPUM_0938___p    438 TGATAAGAAAACAGCTGACGAAGTGGAAAAGAAATTAGATAAAGGTGAAA    487

BSNT_01698___    485 AATTTGATGCCCTTGCGAAGGAATACTCTACAGACACAGGCTCAGCTACA    534
                     |||..|||||..|.|.|...|||||.||.||.||.||.|..||||||.||
BPUM_0938___p    488 AATGGGATGCTGTAGTGTCTGAATATTCAACTGATACTGCTTCAGCTGCA    537

BSNT_01698___    535 AACGGTGGCGAACTTGGCTGGATTTCAAAAGATAACGAACAACTGGATTC    584
                     .|.||.||.||..|.||||||.|..||||||   |.|..|||.||||  |
BPUM_0938___p    538 CAAGGCGGAGATGTAGGCTGGTTCGCAAAAG---AAGGTCAAATGGA--C    582

BSNT_01698___    585 CACA--TTCAGAAAAGCTGCATTCAAGTTGAAAACAAACGAAGTCAGCGA    632
                     .|.|  |||||.||||||||||||||..|.|||...||.|||.|||||.|
BPUM_0938___p    583 GAGAACTTCAGTAAAGCTGCATTCAAACTAAAAGTGAATGAAATCAGCAA    632

BSNT_01698___    633 TCCTGTGAAAACACAATTTGGCTACCATATCATCAAAAAGACTGAAGAAC    682
                     .||.||||||.|||||||.||||||||||||||.||||||||.|||||||
BPUM_0938___p    633 ACCAGTGAAATCACAATTCGGCTACCATATCATTAAAAAGACCGAAGAAC    682

BSNT_01698___    683 GCGGCAAATACGATGATATGAAAAAAGAACTGAAATCTGAAGTGCTTGAA    732
                     ||||.|||||.|||||.||||||..|||..|||||...|||.|.|||||.
BPUM_0938___p    683 GCGGTAAATATGATGACATGAAAGCAGACTTGAAAAAAGAACTACTTGAT    732

BSNT_01698___    733 CAAAAACTAAATGACAGCAATGCCGTTCAGGAAGC-TGTTCAA-AAAGTC    780
                     |||||||.|...||||..||||...|.||  ||.| |.||.|| |||.|.
BPUM_0938___p    733 CAAAAACAAGCAGACACAAATGAAATCCA--AACCATCTTAAACAAATTG    780

BSNT_01698___    781 ATGAAGAAGGCTGACATCGAAGTAAAAGATAAAGATC-TGAAAGCCACAT    829
                     .||||..|.||.||..|..||||||||||||||||.| ||||| .|||.|
BPUM_0938___p    781 GTGAAAGATGCAGATGTGAAAGTAAAAGATAAAGAGCTTGAAA-ACACGT    829

BSNT_01698___    830 TTA---ATACATCTTCAACAA-----GCAACAGCACTTCTTCATCTTCAA    871
                     |||   |.|.||| |||||||     .|||||.||           .|||
BPUM_0938___p    830 TTAAAGAAAAATC-TCAACAACCTGCACAACAACA-----------ACAA    867

BSNT_01698___    872 GCAATTCTAAATAA    885
                     ..||..|  |||||
BPUM_0938___p    868 CAAAACC--AATAA    879


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01698 and BPUM_0938

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
