Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01724 and BPUM_0957
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:13
# Commandline: needle
# -asequence dna-align/BSNT_01724___pbpF.1.24716.seq
# -bsequence dna-align/BPUM_0957___pbpF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01724___pbpF-BPUM_0957___pbpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01724___pbpF-BPUM_0957___pbpF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01724___pbpF
# 2: BPUM_0957___pbpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2272
# Identity: 1498/2272 (65.9%)
# Similarity: 1498/2272 (65.9%)
# Gaps: 263/2272 (11.6%)
# Score: 4644.5
#
#
#=======================================
BSNT_01724___ 1 ATGTTTAAGATAAAGAAAAAGAAACTTTTTATACCTATCATTATTTTAG- 49
.|.||||||||||| .||| ||||||...||||
BPUM_0957___p 1 ---------TTGAAGAAAAAGAA------GATA---ATCATTCCATTAGT 32
BSNT_01724___ 50 ---TGT------TAAC----TGCTTTTCTCGCTTTAATAGGATATATTTC 86
||| ||.| |.|||| |.||.||.||.|||.|..|
BPUM_0957___p 33 CATTGTAGGAAGTACCATTGTACTTT-----CATTTATTGGCTATCTGAC 77
BSNT_01724___ 87 AATTATTTTTCTCGGCCATTATGTCATAGATGAAAAAAAGCTTATTCTTC 136
.|||.|.|||.|.||.||||||||||||||||||||.||||||.|..|||
BPUM_0957___p 78 CATTTTATTTTTAGGACATTATGTCATAGATGAAAAGAAGCTTGTATTTC 127
BSNT_01724___ 137 ATGCTTCTTCAAAAATTGTTGATCAAAACGGAGATGAGGTTGCAAGCCTG 186
|||||||.||..||||..|||||||.||.|||.|.||..|..||||..||
BPUM_0957___p 128 ATGCTTCATCCCAAATCATTGATCAGAATGGAAAAGAACTCACAAGTATG 177
BSNT_01724___ 187 TATACAGAAAATCGCGAGCCGGTCTCGATCAATGAGATTCC----AAAGC 232
|||.||||||||||.||.||.||.||.||.||.||..|.|| ||||.
BPUM_0957___p 178 TATTCAGAAAATCGGGACCCTGTGTCAATAAAGGATGTACCCGATAAAGT 227
BSNT_01724___ 233 AGGTCAGAGAAGCGTTTATCGCTGTTGAGGATAAAAGGTTCTATGAGCAT 282
|| .|.||||.|||.|.|||||.|||||.||..||||.|||||||||
BPUM_0957___p 228 AG----CAAAAGCTTTTGTGGCTGTCGAGGACAAGCGGTTTTATGAGCAT 273
BSNT_01724___ 283 CACGGCATTGATGCAAAATC--TGTCGGAAGGGCAGTGTATCGCGATATA 330
||.||.||||||||..|.|| |.|| ||||||.||.|||||.||||||
BPUM_0957___p 274 CATGGAATTGATGCGCAGTCAATTTC--AAGGGCGGTTTATCGAGATATA 321
BSNT_01724___ 331 TTAGCAGGCGGAAAGGTGGAAGGCGGAAGCACGATCACCCAGCAGCTTGC 380
||||||||.||||||||.||.|||||.||.||.||.||.||||||||.||
BPUM_0957___p 322 TTAGCAGGTGGAAAGGTAGAGGGCGGCAGTACCATTACTCAGCAGCTCGC 371
BSNT_01724___ 381 CAAAAATATTTTTCTGACACATGACAAAACGTTTCTAAGAAAAACAAAAG 430
.||||||||||||||.|||.||||||||||.|||||..||||||||||||
BPUM_0957___p 372 AAAAAATATTTTTCTCACAAATGACAAAACCTTTCTGCGAAAAACAAAAG 421
BSNT_01724___ 431 AAGTGATCATTGCGATCAATCTTGAACGGGATTA--CAGCAAGGACAAGC 478
||||.|||||||||||.|||.|.|||.|.||.|| || |||||.||||
BPUM_0957___p 422 AAGTCATCATTGCGATTAATTTAGAAAGAGACTATTCA--AAGGATAAGC 469
BSNT_01724___ 479 TGCTTGAAATGTATTTAAATCAGCTTTACTTCGGACATGGGGTTTACGGC 528
||||.|||||||||||.|||||||||||||||||.||.||.||.|||||.
BPUM_0957___p 470 TGCTCGAAATGTATTTGAATCAGCTTTACTTCGGTCACGGCGTCTACGGT 519
BSNT_01724___ 529 ATACAAGCGGCGTCCCACTATTATTTTAATAAAGAAGTAAAAGATTTGAC 578
||.||.||.||..||.|.|||||.||||.||||||.||.||||||||.||
BPUM_0957___p 520 ATTCAGGCAGCAGCCAATTATTACTTTAGTAAAGATGTGAAAGATTTAAC 569
BSNT_01724___ 579 TGTATCTGAAGGCGCTG----TTTTGGCCGCTATTCCGAAGGCGCCTTCT 624
|||...||||||.|| | || ||.||.||.||.||||||||.|||
BPUM_0957___p 570 TGTCAGTGAAGGAGC-GACACTT---GCTGCGATGCCAAAGGCGCCGTCT 615
BSNT_01724___ 625 ACGTACTCTCCAATTTTGCACCCTGATAAAAATAAGGAGCGGCGTGATAC 674
||.|||||.||..||||.|||||||||||||||||..|..|.||.||.||
BPUM_0957___p 616 ACTTACTCGCCTGTTTTACACCCTGATAAAAATAAACAAAGACGGGACAC 665
BSNT_01724___ 675 -------AATTCTAGGCATGATGAATGACCAAGGCTA--TATCAGTGCGA 715
|||| |.||||||||.|||||.|| ||||| .|.|
BPUM_0957___p 666 GATCCTTAATT-------TAATGAATGAGCAAGGGTATTTATCA--TCAA 706
BSNT_01724___ 716 AAGAGGCTGTCACCGCACAGGGCCGAACGCTTGGACTGCACGTGAAGAAA 765
.|||..|.||....|||.|.||..||||.||.||..|.||..|.||.||.
BPUM_0957___p 707 CAGAAACAGTAGAAGCAAAAGGAAGAACACTAGGCATTCATTTAAAAAAG 756
BSNT_01724___ 766 CAGTCGGAAACACCTTGGTTTGACAGCTACATTGACCTTGTGATCAAAGA 815
.|.||.|||||.||||||.|.||||||||..|.||.|||.|.||.||.||
BPUM_0957___p 757 AAATCAGAAACGCCTTGGGTGGACAGCTATGTCGATCTTATCATTAAGGA 806
BSNT_01724___ 816 GGCGGAAGACA-AGTATTCCATTTCTGGGGAGCAGCTTCTTCAAGGAGGA 864
.||.||| .|| |||||||||||||....||.||..|.||||||||.||.
BPUM_0957___p 807 AGCAGAA-TCAGAGTATTCCATTTCACATGAACAATTACTTCAAGGTGGT 855
BSNT_01724___ 865 TACACGATCAAGGTGCCGCTCGATTCGAAGCTGCAGAAAACG--GCTTAC 912
||.||.||.|..||.|||.|||||..|||.|||| ||||.| ||||||
BPUM_0957___p 856 TATACCATAACAGTTCCGATCGATATGAATCTGC--AAAAGGTCGCTTAC 903
BSNT_01724___ 913 CAGGTGATGAAAGAGGGTAGCTATTATCCCGG-----AACAGATCAGAAT 957
.|.|.|||||||.|...|.|.|||| |||||| |.|.|.|| |
BPUM_0957___p 904 GATGCGATGAAAAACAATCGTTATT-TCCCGGGAAAAAGCGGTTC----T 948
BSNT_01724___ 958 GCCGAGGGAAGCGCGGTCTTTATTAATAACAAGACAGGCGGTGTAGAAGC 1007
.|.||..|.||.||..||||||||.||||..||.|.||.||.|||.||||
BPUM_0957___p 949 CCTGAAAGCAGTGCTATCTTTATTGATAATGAGTCTGGAGGAGTAAAAGC 998
BSNT_01724___ 1008 GGCCATCGGCGGAAGGGATTA-CACATCCAAAGGATATAACCGTGTCACA 1056
.||.|||||.||..|.||.|| || |.|.|..||.||||||.|.||.|||
BPUM_0957___p 999 TGCAATCGGAGGGCGAGAATATCA-AGCGAGGGGTTATAACAGGGTGACA 1047
BSNT_01724___ 1057 GCTGTCCGCCAGCCGGGTTCCACATTTAAGCCGCTTGCTGTATACGGACC 1106
|||||..|.|||||.||.||....||.||||||.|.||.|||||||||||
BPUM_0957___p 1048 GCTGTGAGGCAGCCTGGATCTGTTTTCAAGCCGATCGCGGTATACGGACC 1097
BSNT_01724___ 1107 GGCGATGCAGGAAAAGAAATTTAAGCCATATTCTCT-ATTGAAG--GATG 1153
.|||.|.|||||.||.|||||....||.|||||.|| .|||||| ||.|
BPUM_0957___p 1098 TGCGCTACAGGAGAAAAAATTCCGACCTTATTCCCTGCTTGAAGACGAAG 1147
BSNT_01724___ 1154 -----AGTTGCAGTCCTACGGAGATTATACGCCGAAAAACTACGACAGCC 1198
|| |||.|..|..|||.|.||.||.||.|||||..|.|
BPUM_0957___p 1148 AAAAAAG--------CTATGACGGCTATTCACCAAAGAATTACGATGGGC 1189
BSNT_01724___ 1199 GGTATGAGGGCGAAGTCACTATGTCTGACGCCATTACGTACAGCAAAAAC 1248
.||||||.|||.|.|||||.|||...||.|||.|.|||.|.||.|||||.
BPUM_0957___p 1190 AGTATGAAGGCAAGGTCACGATGGTGGAGGCCCTCACGAAAAGTAAAAAT 1239
BSNT_01724___ 1249 GCGCCGGCTGTCTGGACGCTGAATGAGATCGGCGTCGAAAC-AGGAAAAT 1297
.|..|.||.||.|||||..|.|...||.|.||..|.||.|| ..|||||
BPUM_0957___p 1240 ACAGCAGCGGTGTGGACATTAAGCCAGCTTGGTATTGATACTTCGAAAA- 1288
BSNT_01724___ 1298 CTTATTT---GAAAGCAAACGGCATTGATATCCCTGATGAAGGACTTGCT 1344
|.|||.| ||| ||..||.||.|||||..|.|||.||||||||||.
BPUM_0957___p 1289 CGTATCTCGAGAA---AATGGGAATCGATATTTCAGATCAAGGACTTGCG 1335
BSNT_01724___ 1345 CTCGCTCTAGGAGGCTTGGAAAAAGGCGTTTCGCCGCTCCAGCTTGCCGG 1394
.|.||.||.||.||.||.||||||||.|||||.||.||.||..||||.||
BPUM_0957___p 1336 ATAGCCCTTGGTGGTTTAGAAAAAGGGGTTTCTCCACTTCAAATTGCGGG 1385
BSNT_01724___ 1395 CGCGTTTCATACATTTGCCGCGAATGGAACG----TATACGGAACCTTTC 1440
.||.||.||.|||||||| ||..|||.| ||||...|.||||||
BPUM_0957___p 1386 AGCTTTCCACACATTTGC----AAACGAAGGTGTATATAAAAAGCCTTTC 1431
BSNT_01724___ 1441 TTTATCTC-GAGCAT----AATAGATGAAGACGGAGAAACAATAGCCGAT 1485
||.|| || ||..|| ||| |||||| ||||||||..|||
BPUM_0957___p 1432 TTCAT-TCAGAAAATCACCAAT-GATGAA---GGAGAAACGGTAG----- 1471
BSNT_01724___ 1486 CATAAA-----GAGGAAG---GAAAGCGGGTTTTCAGCAAGCAGACGTCT 1527
|.||| .||.||| ||| ||.||.||.|||..|||||...||
BPUM_0957___p 1472 -AGAAAAATCGCAGTAAGTCAGAA--CGAGTGTTTAGCGTGCAGAATGCT 1518
BSNT_01724___ 1528 TGGAATATGACGAGAATGCTGCAGCAGGTAGTCAAAAAGGGAACGGCCAC 1577
|||||||||||.||||||||||||||.||.||||||...|||||.|||..
BPUM_0957___p 1519 TGGAATATGACAAGAATGCTGCAGCAAGTTGTCAAAGGCGGAACAGCCCA 1568
BSNT_01724___ 1578 GTCCGGCGCCTATCACGGCGACCTGGCGGGAAAAACAGGTTCTACATCTT 1627
|..|||..|.|||...||.|||.|.||.||.||||||||..|.||..|.|
BPUM_0957___p 1569 GAGCGGTTCATATGCTGGAGACTTAGCAGGGAAAACAGGCACCACCACAT 1618
BSNT_01724___ 1628 ATACAGGCGTCTCCGGCGCGACAAAGGACGCTTGGTTTGCAGGCTATACG 1677
||.||||.||....|||||.||||||||.|||||||||||.||||||||.
BPUM_0957___p 1619 ATTCAGGTGTGAATGGCGCAACAAAGGATGCTTGGTTTGCCGGCTATACA 1668
BSNT_01724___ 1678 CCGAAAATAACCGGGGCAGTCTGGATGGGCTATGACAAAACGGATCAAAA 1727
||.|..|.|||.||.||..||||||||||.|||||||||||.|||.|.|.
BPUM_0957___p 1669 CCAAGTACAACGGGTGCGATCTGGATGGGGTATGACAAAACCGATAACAG 1718
BSNT_01724___ 1728 CCATTATTTGAAAGCCGGGAGCTC-ATACCCGACGCGGCTGTTTAAGGAT 1776
.||.||.||.|..|.|||.|| || |||||||..||.|||||||||||||
BPUM_0957___p 1719 TCACTACTTAACTGGCGGAAG-TCAATACCCGGTGCAGCTGTTTAAGGAT 1767
BSNT_01724___ 1777 ATTTTGACACAGGCAG----------GA--GAAACCGGTCATGTGTTCAC 1814
||.||.|| ||||| || ||||| |||.|.
BPUM_0957___p 1768 ATATTAAC---GGCAGCCCAAATGACGAATGAAAC---------GTTTAA 1805
BSNT_01724___ 1815 AAAGCCTAAAAACATTAAAGACCTGGAAAGC-CCGATT------------ 1851
|||.||..|...|||||||||.|| ..|||| ||.|||
BPUM_0957___p 1806 AAAACCAGAGGGCATTAAAGAACT-TCAAGCACCAATTCATTTAGAAGGA 1854
BSNT_01724___ 1852 -------GAGTTGAAGCC--------GGTCAAAACACTCACAGCCGA--- 1883
||.|||||||| |.|.|||| |||.|| ||
BPUM_0957___p 1855 CTTTCTGGATTTGAAGCCCGCTATGTGTTTAAAA---TCAAAG--GATTG 1899
BSNT_01724___ 1884 -TTACACATTTAAAGCAGCGGGACTCTTTACTATTGAATTAAAGTGGGAC 1932
||||| |||.|||.| ||| |||||.
BPUM_0957___p 1900 TTTACA---TTAGAGCTG------TCT-----------------TGGGAG 1923
BSNT_01724___ 1933 GCTCAAGAGGATGATCGGGCCGTATACAGAATTTATGTAAACAAGGACGG 1982
...|||||||||.|.||||..|.||||.|.|||||||.|||.|.|.|.||
BPUM_0957___p 1924 AAGCAAGAGGATAAACGGGTAGAATACCGTATTTATGAAAAGAGGAATGG 1973
BSNT_01724___ 1983 CGAGGAGACGCTTCTTGATTCGGTTGAAGGG----AAGGGAAGCTATGAA 2028
..|.||||||||..|||||||.| |||..|| || .|||||...|
BPUM_0957___p 1974 AAACGAGACGCTGATTGATTCAG-TGACAGGCGCAAA---TAGCTACACA 2019
BSNT_01724___ 2029 ATTCCTTATGCCAACTTATTTTCGGGCGCGTCTTATAAAATTGTGCCTTA 2078
||.||.|||||.||..|.|||||.|..|||...|||||..|.||.||.||
BPUM_0957___p 2020 ATGCCGTATGCTAATGTGTTTTCAGATGCGGAATATAAGGTGGTTCCATA 2069
BSNT_01724___ 2079 TAATACACAGACAAAAAGAGAAGGGGAAGGAA--CCGATTACGTTCAGCC 2126
||||||.||.||..||..||||||.|||||.| || .||.||..||||
BPUM_0957___p 2070 TAATACCCAAACGGAAGAAGAAGGAGAAGGCAGTCC--ATATGTCAAGCC 2117
BSNT_01724___ 2127 AAAATTG--TTTTCCTC-TTAA 2145
|.| | ||||...| ||||
BPUM_0957___p 2118 AGA---GGCTTTTGGACGTTAA 2136
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