Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01740 and BPUM_0967

See Amino acid alignment / Visit BSNT_01740 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_01740___yhfI.1.24716.seq
#    -bsequence dna-align/BPUM_0967___yhfI.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01740___yhfI-BPUM_0967___yhfI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01740___yhfI-BPUM_0967___yhfI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01740___yhfI
# 2: BPUM_0967___yhfI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity:     497/815 (61.0%)
# Similarity:   497/815 (61.0%)
# Gaps:         151/815 (18.5%)
# Score: 1410.5
# 
#
#=======================================

BSNT_01740___      1 ATGAAAGTTACAGTTATCGGATGCTATGGCGGTTTTCCGGCCGCAAATGA     50
                     ||||||.|.||.||.||.||||||||.||.||.|||||.|||||...|||
BPUM_0967___y      1 ATGAAATTAACTGTCATTGGATGCTACGGAGGGTTTCCTGCCGCTGGTGA     50

BSNT_01740___     51 AGCGACGTCAGGCTATTTGTTTCAGTCAGGT-GATTACTC-TCTGCTTGT     98
                     |||.||||||||.|||.|.|||.|.||||.| |.||  || |||||||||
BPUM_0967___y     51 AGCAACGTCAGGGTATCTTTTTGAATCAGATGGCTT--TCGTCTGCTTGT     98

BSNT_01740___     99 TGATTGCGGCAGTGCCGTTTTGTCTAAGCTG----------TTCGGATAT    138
                     .||.|||||.||.|..|||.|.||.||.|||          ||  |||||
BPUM_0967___y     99 AGACTGCGGAAGCGGTGTTCTTTCCAAACTGCAGCAATACATT--GATAT    146

BSNT_01740___    139 GTGCCGGCGGAAAAGCTGGATGCGGTCGTTCTGTCTCATTATCACCATGA    188
                             .|||.|.||.|||||.||..|.||.||||||||||||||.||
BPUM_0967___y    147 --------AGAAGAACTTGATGCTGTTCTCCTTTCTCATTATCACCACGA    188

BSNT_01740___    189 CCATATCGCTGATATCGGGCCGCTGCAATTTGCCAAGCAAGTCGG--TTC    236
                     .|||||.||.||||||||.||.||.||||.|||.||||.|||.||  .||
BPUM_0967___y    189 TCATATTGCAGATATCGGACCACTCCAATATGCGAAGCTAGTGGGATATC    238

BSNT_01740___    237 GTTTCTCGGCAAAGGAGAGCA----TACGCTTCCGATTTACGGACATGAT    282
                     .||  |.||.|||    ||||    |.|||||||.||.||.||||||   
BPUM_0967___y    239 ATT--TAGGAAAA----AGCAGCGGTCCGCTTCCAATCTATGGACAT---    279

BSNT_01740___    283 GCTGATATAGAACAGTT--TCAA-AAGC-----------TTACATATAAA    318
                                ||.|.|  |||| ||||           ||.|..||.|.
BPUM_0967___y    280 -----------ACGGGTAATCAAGAAGCATTTGGGCGGATTGCGGATGAT    318

BSNT_01740___    319 ACACATACGAAAGGGATCGCCTATCAGCCGGA---------TCAGCCGCT    359
                     ..||||||.||.|..|..||.||||||||..|         |||      
BPUM_0967___y    319 GTACATACTAAGGCTAAGGCTTATCAGCCAAAAGAGGGTATTCA------    362

BSNT_01740___    360 GACTGCCGGTCCGTTTACGATTACCTTTTTAAAAACGATTCA-CCCGGTG    408
                      |.|  .|||||.|||...||.|..|||||.||||||.|||| ||.|..|
BPUM_0967___y    363 -AAT--TGGTCCATTTCAAATCAATTTTTTGAAAACGGTTCATCCAGCAG    409

BSNT_01740___    409 ACGTGCTATGCCATGCGGATTACTGACGGCAGTCACA-----CT---GTT    450
                     | .||||||||.|||.|.|||        |||.||.|     ||   ||.
BPUM_0967___y    410 A-ATGCTATGCGATGAGAATT--------CAGGCAAAGGATGCTGTGGTG    450

BSNT_01740___    451 GTTTATACTGCTGATTCCAGCTATCAGGATTCATTTATACCGTTTTCG-A    499
                     ||.|||||.||.||.||.||.||||||||..|||||.| ||.||||.| |
BPUM_0967___y    451 GTGTATACAGCAGACTCAAGTTATCAGGAGGCATTTGT-CCCTTTTAGCA    499

BSNT_01740___    500 AAGATGCTGATTTATTGATCTCAGAATGCAATTTTTATGCCGATCAAGAC    549
                     |.|||||.||||||.|.||..|.|||.|.||.||.||.||.|..||.|||
BPUM_0967___y    500 AGGATGCAGATTTACTCATTGCTGAAAGTAACTTCTACGCTGGACAGGAC    549

BSNT_01740___    550 GGAACAAGTGCAGGCCATATGA-------ACAGCCTGG-AAGCCGGGCGC    591
                     |||.|.||||||||.|||||||       |.||..||| ||||       
BPUM_0967___y    550 GGATCGAGTGCAGGACATATGAATAGTACAGAGGTTGGCAAGC-------    592

BSNT_01740___    592 ATTGCAAAAGAAGC-------GGGAGCGGGAGAACTGCTGCTGACACATT    634
                      ||||||..|||||       |||       ||||||.|..|.||.||..
BPUM_0967___y    593 -TTGCAATGGAAGCAAATGTTGGG-------GAACTGATCATCACCCACC    634

BSNT_01740___    635 TGCCGCATTTTGG-CGTGCATGACAATCTTCGCAAAGAAGCGAAAACCGT    683
                     ||||.|||||||| ||| |||.|..|.||...|||.||||| |.|..|||
BPUM_0967___y    635 TGCCCCATTTTGGCCGT-CATAAAGACCTAGTCAATGAAGC-ACAGGCGT    682

BSNT_01740___    684 TTTTAACGGAGAAGTGTATA----TTGCGAAATCAGGTTTTGTGTG----    725
                     |.|..||.|..||   ||||    ||||..|.|||||..||...||    
BPUM_0967___y    683 TATATACTGGCAA---TATACAGCTTGCCCATTCAGGGCTTAGATGGAAC    729

BSNT_01740___    726 --GGAAGGATAA---    735
                       |||||||..|   
BPUM_0967___y    730 AAGGAAGGAAGATAG    744


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