Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01744 and BPUM_0970

See Amino acid alignment / Visit BSNT_01744 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:15
# Commandline: needle
#    -asequence dna-align/BSNT_01744___yhfM.1.24716.seq
#    -bsequence dna-align/BPUM_0970___yhfM.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01744___yhfM-BPUM_0970___yhfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01744___yhfM-BPUM_0970___yhfM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01744___yhfM
# 2: BPUM_0970___yhfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity:     237/489 (48.5%)
# Similarity:   237/489 (48.5%)
# Gaps:         174/489 (35.6%)
# Score: 520.0
# 
#
#=======================================

BSNT_01744___      1 ATGAAAAAAATAGTGGCAGCCATCGTGGTAATCGGTCTTGTGTTTATCGC     50
                     |||||.|||||..|.||||..||.|||.|..|.||.|||.|..||||..|
BPUM_0970___y      1 ATGAAGAAAATCCTTGCAGGAATTGTGATCTTTGGACTTTTACTTATTAC     50

BSNT_01744___     51 ATTTTTTTATCTTTACAGCCGATCAGGCGATGTGTATCAATCGGTAGACG    100
                     .||.||||||.|.|.|||.||..|||||||        ||||        
BPUM_0970___y     51 CTTCTTTTATGTATTCAGTCGGACAGGCGA--------AATC--------     84

BSNT_01744___    101 CGGATTTGATCACACTGTCTTCAAGCGGCCAGGAAGAT----------AT    140
                         ||||||.|         .||.||..|||.||.||          ||
BPUM_0970___y     85 ----TTTGATGA---------GAATCGAGCAGAAAAATTACTCCTTTCAT    121

BSNT_01744___    141 C-----GAGA-----------TTGAAAAA----------AGACAGCACGT    164
                     |     ||||           .|||||.|          |.||||||   
BPUM_0970___y    122 CTAAAAGAGAATCCATTTCTTATGAAATAGACGATAAGGACACAGCA---    168

BSNT_01744___    165 CAAAGATATGCTGGA--TATTATGAATCAGGGAAAACAGGTGAAGACAG-    211
                      .|||||.|..|.||  .||||  |||.|.||.|||||    ||.| || 
BPUM_0970___y    169 -GAAGATTTAATAGAAGAATTA--AATAAAGGCAAACA----AACA-AGT    210

BSNT_01744___    212 ---------AAAAAACATC----AGCCCCTGATTA-----CGAAGGGACA    243
                              ||.|||.|||    ||..||.|||||     |.||||    
BPUM_0970___y    211 AATCATCTCAAGAAAAATCTAAAAGAACCAGATTATATCGCCAAGG----    256

BSNT_01744___    244 ATCAAGTTTCAT---------AAAGACCGGTATGACTCATTCAGACTATG    284
                             |.||         ||..|.|||.|..|| |.||||| ||.||
BPUM_0970___y    257 --------TGATGTACGGCCGAACAAACGGCACCAC-CTTTCAG-CTTTG    296

BSNT_01744___    285 GATTGACGGCAGCCAGCAAGCCG------------TTTTTTCGAAGGATG    322
                     ||              |||.|||            ||||||.|.| ||||
BPUM_0970___y    297 GA--------------CAAACCGTTCGCAGGTTGTTTTTTTAGTA-GATG    331

BSNT_01744___    323 GCACATACTACAAATTGAGCAAAAATGATACAAAGGCGCTGCTAAATATT    372
                     |.||.||.||     |||||     |||..||||..|..| ||.|||.||
BPUM_0970___y    332 GGACTTATTA-----TGAGC-----TGAATCAAAAACAGT-CTCAATCTT    370

BSNT_01744___    373 ATTAA---------AAAAGAAGC------AAAGGATTGA    396
                      ||.|         |||||||||      ||||...|||
BPUM_0970___y    371 -TTCAGAAACAGTTAAAAGAAGCCATTCAAAAGAGCTGA    408


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