Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00677 and BPUM_0987
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:21:27
# Commandline: needle
# -asequence dna-align/BSNT_00677___yclQ.1.24716.seq
# -bsequence dna-align/BPUM_0987___yclQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00677___yclQ-BPUM_0987___yclQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00677___yclQ-BPUM_0987___yclQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00677___yclQ
# 2: BPUM_0987___yclQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity: 674/994 (67.8%)
# Similarity: 674/994 (67.8%)
# Gaps: 89/994 ( 9.0%)
# Score: 2107.0
#
#
#=======================================
BSNT_00677___ 1 ATGAAAAAGTTCGCATTACTATTCATCGCTTTGGTGACGGCA---GTTGT 47
||||||||.| |.|||...| |.||..||.||.|.||.||| ||.||
BPUM_0987___y 1 ATGAAAAAAT--GGATTTGGA-TGATGACTGTGTTAACCGCAATCGTCGT 47
BSNT_00677___ 48 GATTTCTGCATGCGGAAACCAAAGCACAAGCAGCAAAGGTTCTGATTCTA 97
..|..||||.|||||.|||| |||.|.||.||| ||||..| |
BPUM_0987___y 48 ACTCGCTGCCTGCGGGAACC-AAGGAAAAACAG--AAGGAAC-------A 87
BSNT_00677___ 98 AGGAAGAACAAA---TCACGGTGAAACACCAGCTGGACAAAAACG----G 140
| ||||..||| |||||||.|||.||..|||..|.|||.|.| |
BPUM_0987___y 88 A--AAGAGGAAACCGTCACGGTAAAAGACATGCTCAATAAAGATGGTGTG 135
BSNT_00677___ 141 AACA--AAAGTACCGAAGAGCCCTAAAAAAGTTGTCGTATTTGACTTTGG 188
||.| || |||.|.|||.||||||||.|||||.|||||..|.||
BPUM_0987___y 136 AAGATTAA------GAAAAACCCGAAAAAAGTAGTCGTGTTTGATATGGG 179
BSNT_00677___ 189 AAG-CTTAGATACACTAGATAAACTTGGTCTTGATGATAAAGTAGCGGGA 237
||| ||| |||||.|||||.|||||.|| ||..||.||..|.|..
BPUM_0987___y 180 AAGTCTT-GATACGCTAGACAAACTAGG------TGTGAACGTGACAGCT 222
BSNT_00677___ 238 CTGCCGAAACAAGCCCTTCCTAAATATCTGTCCAAAT-TCAAGGATGACA 286
||.||||||||||.|.|.|||||||||.|.||.|||| |.|||| .||||
BPUM_0987___y 223 CTACCGAAACAAGTCGTACCTAAATATTTATCGAAATATGAAGG-GGACA 271
BSNT_00677___ 287 AATATGCTGACGTCGGAAGCTTAAAAGAGCCAGACTTCGAGAAAGTGGCA 336
|||||....|.|||||..|.|||||||||||..||||.||.|||.|.|||
BPUM_0987___y 272 AATATAAAAATGTCGGTGGATTAAAAGAGCCGAACTTTGAAAAAATTGCA 321
BSNT_00677___ 337 GATTTAGACCCTGACTTGATCATTATCTCAGGA-AGACAATCTGAGTCTT 385
||..|.||.|||||.||.|||||||| ||||.| .|.|||.|.||..|.|
BPUM_0987___y 322 GAAATCGATCCTGATTTAATCATTAT-TCAGCATCGTCAAGCAGATGCAT 370
BSNT_00677___ 386 ACAAAGAATTCTCTGAAATTGCGCCGACAATTTACCTTGGCGTAGACACA 435
.|.|.|||||.||.||||||||.|||||.|||||..|.|..|||||||..
BPUM_0987___y 371 TCGATGAATTTTCCGAAATTGCCCCGACGATTTATATGGATGTAGACAAT 420
BSNT_00677___ 436 GCGAAGTATATGGAATCATTT---AAGTCTG--ACGCAGAAACAATCGGT 480
||.||.||.|||||||||||| |||..|| ||| |||.|.||.
BPUM_0987___y 421 GCCAACTACATGGAATCATTTAAAAAGAATGCTACG-----ACACTAGGC 465
BSNT_00677___ 481 AAGATCTTCGATAAAGAAGATGAAGTGAAGGATGAACTCGCAAAAATCGA 530
||.||.||.|||||||||||..||||.||.||.||.||.|||...||.||
BPUM_0987___y 466 AAAATTTTTGATAAAGAAGACAAAGTCAAAGAAGAGCTTGCAGCCATTGA 515
BSNT_00677___ 531 TCATTCAATCGCAGATG---TAAAGAAAACGGCTGAAAAGCTTAACAAAA 577
||| ||..|..|||| ||||||||...||..||.||.|.||.||||
BPUM_0987___y 516 TCA---AAAAGTGGATGCTTTAAAGAAACAAGCAAAAGAGATAAAGAAAA 562
BSNT_00677___ 578 ACGGTCTCGTCATCATGGCGAACGACGGGAAGATCAGCGCATTCGGTCCT 627
|.||.||.||.|||||||||||||||.|.||.||.|..||.||.||||||
BPUM_0987___y 563 ATGGGCTGGTGATCATGGCGAACGACAGCAAAATGACAGCCTTTGGTCCT 612
BSNT_00677___ 628 AAATCAAGATACGGCCTGATCCATGACGTGTTCGGCGTGACACCGGCTGA 677
||.||.||||||||.||.|||||.||.|||||.||..|.||||||||.||
BPUM_0987___y 613 AAGTCTAGATACGGTCTTATCCACGATGTGTTTGGGATCACACCGGCAGA 662
BSNT_00677___ 678 TAAAAA--------CATC----AAAGCGTCTACTCACGGACAAAGCGTTT 715
|.|||| |||| ||| |||||.||||||.|||
BPUM_0987___y 663 TCAAAAGCTTGAGCCATCTGATAAA---------CACGGTCAAAGCATTT 703
BSNT_00677___ 716 CTTACGAGTACAT-TTCAAAAACAAACCCGGATTACCTGTTTGTCATTGA 764
|.||.||.||||| .|| |||||.|||||.|||||.||.||||||.||||
BPUM_0987___y 704 CGTATGAATACATGGTC-AAAACGAACCCAGATTATCTATTTGTCGTTGA 752
BSNT_00677___ 765 CCGCGGTACAGCGATCGGTGAAACATCATCTACTAAACAAGTCGTTGAAA 814
.||.||..||||||||||.|||..|.|.|||.|.|||||..|.|||||||
BPUM_0987___y 753 TCGAGGCGCAGCGATCGGAGAAGAAACTTCTGCGAAACAGCTTGTTGAAA 802
BSNT_00677___ 815 ATGATTATGTGAAAAATGTAAACGCAGTGAAAAATGATCATGTCGTCTAC 864
||||||||||||||...||.||.||.||.|||||..|.|||||.||.||
BPUM_0987___y 803 ATGATTATGTGAAATCAGTCAAAGCGGTCAAAAACAACCATGTGGTGTA- 851
BSNT_00677___ 865 CTTG-ATTCTGCTACTTGGTACTTATCAGGAGGCGGTCTTGAGTCTATGG 913
.||| |.||||..|..|||||.|||||.||.|||||.|||||.||..||.
BPUM_0987___y 852 TTTGAACTCTGACATGTGGTATTTATCTGGCGGCGGCCTTGAATCATTGA 901
BSNT_00677___ 914 CACAAATGATCAAAGAAGTGAAAGACGGTTTAG---AGAAGTAA 954
|....|||||..|.|||||.|||.|.||..|.| |.||.|||
BPUM_0987___y 902 CTGCCATGATTGATGAAGTAAAACAAGGGATTGACCAAAAATAA 945
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