Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01776 and BPUM_0989
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:16
# Commandline: needle
# -asequence dna-align/BSNT_01776___yhjD.1.24716.seq
# -bsequence dna-align/BPUM_0989.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01776___yhjD-BPUM_0989.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01776___yhjD-BPUM_0989.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01776___yhjD
# 2: BPUM_0989
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 418
# Identity: 233/418 (55.7%)
# Similarity: 233/418 (55.7%)
# Gaps: 95/418 (22.7%)
# Score: 561.0
#
#
#=======================================
BSNT_01776___ 1 ------ATGCCAA----ATCTGCAGGAGGAAATATAC-GATT----TAAT 35
|||.|.| ||| ||..|||| |.|| |.||
BPUM_0989 1 TTGGACATGACGAGACTATC---------AAGAATACAGCTTCAAATGAT 41
BSNT_01776___ 36 TGAACGGGCTCTCTTTTTGCCCATGGCCATTACGATTTTTAACCGTGAT- 84
.||||.|||..|||||.|.||.||||.|.|..|.||..|.||.||||||
BPUM_0989 42 GGAACAGGCCATCTTTCTTCCAATGGTCGTCTCCATCCTCAATCGTGATT 91
BSNT_01776___ 85 ---CTCGCCGGAATTGAAGAAAGC-----ACATTAAAATTGAAGCATCCT 126
||| |.|.||.|.|.| |||||.|||.|.||..|.||.
BPUM_0989 92 TGACTC------ACTTAAAACAACATCAAACATTTAAACTAAATGAACCA 135
BSNT_01776___ 127 TATAAACAGCTTATCAGCGA-----ATCATTAAAAATAGCACAAAAGG-A 170
||.|..||||| ||.|| .|| |||||...||||||||||| |
BPUM_0989 136 TACATTCAGCT----AGTGACCTCTGTC-TTAAAGGAAGCACAAAAGGCA 180
BSNT_01776___ 171 TTTGATGGAGGTCAGAAA--AGAACTGAGGAAAAGAAAAATT-------- 210
.||.|||.| ..||| ||.|.|.|.|.|||||||||.|
BPUM_0989 181 CTTTATGAA----CTAAAGCAGCATTTACGTAAAGAAAAAATGAAGGTGC 226
BSNT_01776___ 211 -GCAATCCGCGAGACGGAACGCGATGAAGCCTTTACGCTCTATACATTTG 259
|||| |..||||.||||||||..|||||....|||..||||.
BPUM_0989 227 AGCAA--------ATTGAACACGATGAAGGATTTACAACGTATCTATTTA 268
BSNT_01776___ 260 TCATCGACGGTTATGAAGAAAACCATCGCTATTTTAATCCGCGAATCCGT 309
||||.||.||.|||||||||||.|||...||.||||||||.||.||.|||
BPUM_0989 269 TCATGGATGGCTATGAAGAAAAACATAAATACTTTAATCCACGTATACGT 318
BSNT_01776___ 310 GAGCAGGTCAG-CGAATTATTAACATACTATC--TATTTGCCCCGGACAG 356
.|.|.||| || .|||.|..|.|| || |||||.|
BPUM_0989 319 CACCGGGT-AGAGGAACTGCTGAC------TCGTTATTTTC--------- 352
BSNT_01776___ 357 ACTC--CGAGCCTTTTGA 372
.|| |.|||...||||
BPUM_0989 353 -TTCATCAAGCGAATTGA 369
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