Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01817 and BPUM_0997

See Amino acid alignment / Visit BSNT_01817 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_01817___yisB.1.24716.seq
#    -bsequence dna-align/BPUM_0997___yisB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01817___yisB-BPUM_0997___yisB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01817___yisB-BPUM_0997___yisB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01817___yisB
# 2: BPUM_0997___yisB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 308
# Identity:     215/308 (69.8%)
# Similarity:   215/308 (69.8%)
# Gaps:          13/308 ( 4.2%)
# Score: 712.0
# 
#
#=======================================

BSNT_01817___      1 ATGGCAAAGCAGACTGCCGGAATATGTGAGCTGTGCGGCCGGAGCGATGT     50
                     |||||||||||.||....|||.||||||||||||||||..||....||||
BPUM_0997___y      1 ATGGCAAAGCAAACGATTGGATTATGTGAGCTGTGCGGAAGGCAAAATGT     50

BSNT_01817___     51 CCAGCTGACAGAGCATCATCTCACACCGAAAGAGGAAGGCGGAACGTTTT    100
                     ||.|||.|||||.||.||..|.|||||.|.|||.|||||.||..|.||||
BPUM_0997___y     51 CCTGCTCACAGAACACCACTTAACACCAAGAGAAGAAGGTGGGGCTTTTT    100

BSNT_01817___    101 TGCCGACAGCGATGCTCTGTATTCCTTGTCATAAACAGATTCATGCCTTA    150
                     |.|||||.||..|.||.|||||.||.||.||||||||..|.||||||.|.
BPUM_0997___y    101 TACCGACTGCCTTCCTGTGTATCCCCTGCCATAAACAAGTGCATGCCCTC    150

BSNT_01817___    151 TATACCAATCAAGAGCTCGCTGTACGTTTAAATGGAATGGCTGAACTCAG    200
                     |.|||.||.||.|||||.||.|..||.||||....|.|.|.||.|||.||
BPUM_0997___y    151 TTTACAAACCAGGAGCTTGCCGCGCGCTTAAGCACACTTGATGCACTAAG    200

BSNT_01817___    201 AAGCGATCCAGAGCTTGCCCGGTTTG----TCAAATGGATCAGAAAACAG    246
                     |...|||..|.|||||||    ||.|    ||||||||||..||||||||
BPUM_0997___y    201 ACAAGATGAAAAGCTTGC----TTCGTACATCAAATGGATTCGAAAACAG    246

BSNT_01817___    247 CCGCCTGAG-AAGCTGATCAAAACAAAGAAATCAAATGAACGAAAAAAGA    295
                     |||.| .|| ||.|||.|.||||||||.|||||||...||||.|.|||.|
BPUM_0997___y    247 CCGGC-AAGCAAACTGGTTAAAACAAAAAAATCAAGACAACGCAGAAAAA    295

BSNT_01817___    296 AAAAATGA    303
                     ||.||   
BPUM_0997___y    296 AATAA---    300


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