Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01820 and BPUM_0999

See Amino acid alignment / Visit BSNT_01820 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:20
# Commandline: needle
#    -asequence dna-align/BSNT_01820.1.24716.seq
#    -bsequence dna-align/BPUM_0999___gerPE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01820-BPUM_0999___gerPE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01820-BPUM_0999___gerPE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01820
# 2: BPUM_0999___gerPE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity:     216/476 (45.4%)
# Similarity:   216/476 (45.4%)
# Gaps:         178/476 (37.4%)
# Score: 479.0
# 
#
#=======================================

BSNT_01820         0 --------------------------------------------------      0
                                                                       
BPUM_0999___g      1 ATGATAAAGCGCACATCTCAAGTGAAGTTCTCGAAGGTGAATTCTGTCGG     50

BSNT_01820         1 --------GTGT--TTCAAGTTGGCGACACAAATGAAATCGATATG----     36
                             ||||  |||||.|.||.||.|||.|.||    |.||||    
BPUM_0999___g     51 GATCTCAAGTGTTGTTCAAATCGGTGATACACAGGA----GCTATGCCCG     96

BSNT_01820        37 --AGTGTAAAAGTATTTGCTGTTCAGCG----------TTCTCTGTCCAC     74
                       ||||  ||.||.||.|||||||||||          ||          
BPUM_0999___g     97 AAAGTG--AAGGTGTTAGCTGTTCAGCGAACCGTTAGTTT----------    134

BSNT_01820        75 GTTTTACAATAATGAAGGCTCATTTAACAAAAAGGAGTACCAGATCTTTC    124
                     ||||||....|||||||   ||...|||..|.|.|.|.|  |||..||  
BPUM_0999___g    135 GTTTTATGGGAATGAAG---CAGAAAACTTAGATGCGAA--AGAATTT--    177

BSNT_01820       125 AGCAGCAGGCAGTG------AAGCCGATT------------CCCGAAACA    156
                             |.||||      .||||.|||            ||.|||..|
BPUM_0999___g    178 --------GAAGTGTATTATGAGCCTATTCCATTGATGTTGCCAGAACGA    219

BSNT_01820       157 GGTGTACA-AAGCGCATTTTGCCACGAGGTGCCGGCTATTTATGTTCGCA    205
                     ..||| || ||..||.||||..||||||..|||.|..|||.|.|||    
BPUM_0999___g    220 TCTGT-CAGAACAGCTTTTTATCACGAGAAGCCTGTGATTAAAGTT----    264

BSNT_01820       206 GCATCAAAA----TTCAAGGGGTGTCCGCCTCTTCTGTTTTACATGCTGG    251
                     .|.||||.|    |..||||||||||..||||.|||||.||.||...|||
BPUM_0999___g    265 TCTTCAATACATGTAGAAGGGGTGTCTTCCTCCTCTGTGTTTCAAATTGG    314

BSNT_01820       252 TTCAGCTTCGCTT-------ATCCGCGGTGATGCGAGAATCAAACATATC    294
                     .|   ||.||..|       ||    ||.|.|||.|||.|.||.|||||.
BPUM_0999___g    315 CT---CTACGTGTGGAATGAAT----GGCGTTGCAAGAGTGAAGCATATT    357

BSNT_01820       295 AGACAG--ATTCAGTC-----------TCCGC---GCTCAC-AATCGCCC    327
                     .||.||  |||.|| |           |||||   .||||| |||.|.||
BPUM_0999___g    358 CGAGAGTTATTTAG-CAACGACGAAAGTCCGCCAAACTCACAAATGGACC    406

BSNT_01820       328 GCCAAGAACATATAA-----------    342
                     ..|..|..|||||.|           
BPUM_0999___g    407 TACCTGCGCATATGATGGTGATATGA    432


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