Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01826 and BPUM_1003
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:20
# Commandline: needle
# -asequence dna-align/BSNT_01826___gerPA.1.24716.seq
# -bsequence dna-align/BPUM_1003___gerPA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01826___gerPA-BPUM_1003___gerPA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01826___gerPA-BPUM_1003___gerPA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01826___gerPA
# 2: BPUM_1003___gerPA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 229
# Identity: 162/229 (70.7%)
# Similarity: 162/229 (70.7%)
# Gaps: 14/229 ( 6.1%)
# Score: 553.0
#
#
#=======================================
BSNT_01826___ 1 ATGCCGGCCATTGTCGGAGCGTTTAAAATTAATGCGATTGGTACGAGCGG 50
||||||||.|||||.|||||.||||||.|.|||||..|.||.||||||||
BPUM_1003___g 1 ATGCCGGCTATTGTTGGAGCCTTTAAAGTAAATGCCGTCGGAACGAGCGG 50
BSNT_01826___ 51 AGTCGTTCACATCGGGGACTGCATTACGATTTCTCCTCAGGCTCAGGTCA 100
|||||||||..|.||.||||||||.||.||||||||..|...||||||.|
BPUM_1003___g 51 AGTCGTTCATGTTGGAGACTGCATCACCATTTCTCCAAATAGTCAGGTTA 100
BSNT_01826___ 101 GAACGTTTGCCGGTGCTGGCAGCTTTAATACCGGCGACAGCCTCAAGGTG 150
.|||||||||.||.||.|||||.|||||.||.||.|| |||| |.
BPUM_1003___g 101 AAACGTTTGCTGGCGCAGGCAGTTTTAACACTGGTGA-----TCAA--TT 143
BSNT_01826___ 151 ATGAATTATCAA----AACA---CGACGAATGTGTATGACAATGATGCGG 193
..|.||||.||| ||.| .|||.|||..|||.||||.|||||...
BPUM_1003___g 144 GCGCATTAGCAACTATAAAAGTGTGACAAATACGTACGACAGTGATGTCA 193
BSNT_01826___ 194 TTGATCAGCCGATCGTGGCCAATGCGTAA 222
|||||||.|||.|.||.|..||...||||
BPUM_1003___g 194 TTGATCAACCGCTTGTTGGTAACTTGTAA 222
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