Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01843 and BPUM_1013
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:22
# Commandline: needle
# -asequence dna-align/BSNT_01843___yisQ.1.24716.seq
# -bsequence dna-align/BPUM_1013___yisQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01843___yisQ-BPUM_1013___yisQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01843___yisQ-BPUM_1013___yisQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01843___yisQ
# 2: BPUM_1013___yisQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1485
# Identity: 963/1485 (64.8%)
# Similarity: 963/1485 (64.8%)
# Gaps: 225/1485 (15.2%)
# Score: 3106.0
#
#
#=======================================
BSNT_01843___ 1 ATGAAA---CAAGCTGTC--------TTCA----AATCAACTGCT----- 30
|||||| ||| || |||| |.|||| |||
BPUM_1013___y 1 ATGAAACCTCAA----TCACTACCAATTCAACAGACTCAA--GCTAAAGG 44
BSNT_01843___ 31 -TTGAAAAAACCCGCTGACAAAACGTTCTCATTATTTTCGCTTACTTGGC 79
..||||||.|||.|| |||||||||.|..|.|||||||
BPUM_1013___y 45 GAAGAAAAACCCCCCT------------TCATTATTTGCATTAACTTGGC 82
BSNT_01843___ 80 CGATCTTTATTGAGGTCTCATTATATATGTTTATGGGTAATGCCGATACA 129
|.||.||||||||..||||.|||||||||.|.|||||.|..||.|||||.
BPUM_1013___y 83 CTATTTTTATTGAAATCTCTTTATATATGCTGATGGGAAGCGCTGATACC 132
BSNT_01843___ 130 CTGATGCTCAGCCAATACTCGGATAACAGCGTGGCAGCAGTCGGCGTCAG 179
||.|||||.||||||||.||.|||||.||.||.||.|||||.||.||.||
BPUM_1013___y 133 CTCATGCTTAGCCAATATTCCGATAATAGTGTTGCCGCAGTTGGTGTAAG 182
BSNT_01843___ 180 CAACCAGATTTTAAATTTAATTATCGTGATGTTCAGCTTTATCGCAACAG 229
|||||||.|..|.||||||.|.||.||.||||||||.||.||..||||.|
BPUM_1013___y 183 CAACCAGCTGCTGAATTTATTGATTGTCATGTTCAGTTTCATTACAACTG 232
BSNT_01843___ 230 GAACGACCGTTATCATTTCACAATTTCTAGGCTCACGGCAAAAGAAAGAA 279
||||.||..||.|.|||.||||..||.||||..||.|.|..|.|.|.|||
BPUM_1013___y 233 GAACAACAATTGTGATTGCACAGCTTTTAGGAGCAAGCCGCAGGCAGGAA 282
BSNT_01843___ 280 GCCATGG---AAGTCGCTTATGTGTCAATCGGCGCCAACTTCTTCATCAG 326
|| || |||||||.|||||.|||.|.||..||||.|||||.||.||
BPUM_1013___y 283 GC---GGCTCAAGTCGCCTATGTCTCACTAGGAACCAATTTCTTGATTAG 329
BSNT_01843___ 327 CCTGGCCATTAGCGCCATCGTCT----TTTTCGCG-----GCTGTCCCTC 367
|.|.|..||||| ||.||| ||| | |||||.||..
BPUM_1013___y 330 CTTTGTTATTAG-----TCTTCTCATGTTT----GTATTAGCTGTTCCCA 370
BSNT_01843___ 368 TGCTTCATATGATGGGATTATCAGACGCACTGATGCCTGATGCGAAAGTC 417
|..|.||..|||||||.||||||...|..||.|||||.|||||||..||.
BPUM_1013___y 371 TTTTACACCTGATGGGCTTATCAAGTGAGCTCATGCCGGATGCGACTGTA 420
BSNT_01843___ 418 TTTTTACAAGTTGTCGGAGGT-CTGTCCTTTATTCAGGCTTTAATCATGA 466
|||||||||.||||||| |.| ||.||.||||||||.||..|.||.||||
BPUM_1013___y 421 TTTTTACAAATTGTCGG-GCTGCTTTCTTTTATTCAAGCGCTCATTATGA 469
BSNT_01843___ 467 CATTCAGCGCGATCTTAAAAAGCTATGGCTATACAAAAGATACAATGTTT 516
|.|..||.||.||.||||||||||||||.|||||||.||||||.||||.|
BPUM_1013___y 470 CGTATAGTGCTATTTTAAAAAGCTATGGATATACAAGAGATACGATGTAT 519
BSNT_01843___ 517 GTCACTATCGGCATGAACATTTTAAACATTGCCGGAAACTTTGTTGTGAT 566
|||||||||||.||||||.|..||||..|.||.||.||||.|.|.|||||
BPUM_1013___y 520 GTCACTATCGGAATGAACTTGCTAAATGTCGCTGGTAACTATTTGGTGAT 569
BSNT_01843___ 567 TTTTGGTTTGTTCGGCTTTCCTGTTCTCGGCGT--TGCCGGTGTGGCCAT 614
|||.|||..|||.|||||.|||.|..|.||.|| || ||.||.||..|
BPUM_1013___y 570 TTTCGGTCCGTTTGGCTTCCCTATATTAGGTGTCATG--GGGGTCGCTTT 617
BSNT_01843___ 615 GTCCACATCTATCGCCCGCGTCATCGGATTAATCGCGATGATTGTGATTG 664
.||.||.||..||||.||..|.|||||||||||.||.|||||..|.||||
BPUM_1013___y 618 TTCAACCTCACTCGCTCGATTGATCGGATTAATGGCCATGATCCTCATTG 667
BSNT_01843___ 665 TCAACAAACGC-----------ATTCAGCTGAAGATGTCGCTGAAAAAAG 703
| |||| |||..||| |.||.|||||.|||.
BPUM_1013___y 668 T------ACGCCGCCGAATTGGATTACGCT-----TTTCCCTGAAGAAAA 706
BSNT_01843___ 704 TCTTTCATATGCATAAAGAAC--ATTTGCGCAAGCTGCTGAAAATCGGCA 751
|.||||||||.| |..|.|| ||||....||||||||||||||.||||
BPUM_1013___y 707 TGTTTCATATCC--AGCGGACATATTTAAAAAAGCTGCTGAAAATTGGCA 754
BSNT_01843___ 752 TTCCTTCTGCGGGAGAGCAGCTTTCATACAACCTTTCGCAAATGATTGTC 801
||||||||||.|||||.||||||||.||.||....||.||||||||..|.
BPUM_1013___y 755 TTCCTTCTGCTGGAGAACAGCTTTCTTATAATGGCTCTCAAATGATCATT 804
BSNT_01843___ 802 ACGTATTTTATCGCGATCATGGGCGCGCAGGCGTTGACAACAAAAGTGTA 851
||....|||||..|..|.|||||..|||||||.||..|..||||.||.||
BPUM_1013___y 805 ACACTGTTTATTACATTAATGGGGACGCAGGCATTAGCTGCAAAGGTTTA 854
BSNT_01843___ 852 TACGCAAAATATTACGATGTTTATTTTGCTGTTCGGCACTGCGATCAGCC 901
|||.||||||||||.||||||.||..||||.||.||..|.||.||.||||
BPUM_1013___y 855 TACTCAAAATATTATGATGTTCATCATGCTATTTGGTGCAGCCATTAGCC 904
BSNT_01843___ 902 AGGGTACACAAATCTTAATCGGCCGTTATATCGGCGGC-AAACAATTTGA 950
|.||.||||||||.||||||||.||..||||.|| ||| ||..||||.||
BPUM_1013___y 905 AAGGGACACAAATTTTAATCGGACGCCATATTGG-GGCGAAGGAATTCGA 953
BSNT_01843___ 951 TGCCGCTTATGAGCGCTGCATGAAGAGCTTATATTGGGCACTCGGAATTG 1000
|||.||.|||.|..|.||||||||.||.|||||.|||||..|.||.||
BPUM_1013___y 954 TGCTGCCTATCACAGATGCATGAAAAGTTTATACTGGGCCATTGGCAT-- 1001
BSNT_01843___ 1001 CTGCGGCTACCT-----------CTGTTTTGATGACGATCTTT-TCAAAA 1038
||.||| |||..|| |||||| ||
BPUM_1013___y 1002 ------CTCCCTTCTTTCTTCTACTGCCTT-------ATCTTTATC---- 1034
BSNT_01843___ 1039 GACCTGATCGGAC--------------TCTTCACACAAAGCCCTGACATT 1074
||| ||| ||||.||
BPUM_1013___y 1035 ------ATC-GACGCATTTGCTTGCTTTCTTTAC---------------- 1061
BSNT_01843___ 1075 ATAGCAACTGCAAGCCTATTGATT---------GCCA------------T 1103
|||||||.||.|| .|.||| |||| |
BPUM_1013___y 1062 -TAGCAACAGCGAG----ATCATTCAAACCGCCGCCACACTCCTCCTTTT 1106
BSNT_01843___ 1104 GACCATTATCCTTGAACCAGGCCGCTCGTTTAAT---GTCATTATCATTA 1150
|||||||||..|.|||||||||||.||||||||| ||||||||| |
BPUM_1013___y 1107 GACCATTATTTTGGAACCAGGCCGTTCGTTTAATATGGTCATTATC---A 1153
BSNT_01843___ 1151 ACTCTCTGCGGGCCGCGGGGGATGCGAAATTCCCGGTTTACATGGCGATG 1200
|.||..|||||||.||.||.||.|||||.||.||.||.||.|||||||||
BPUM_1013___y 1154 ATTCCTTGCGGGCTGCTGGCGACGCGAAGTTTCCAGTGTATATGGCGATG 1203
BSNT_01843___ 1201 ATTTCAATGTGGGGCATTGGCCTCCCGCTTGCTTATCTT-TTTGGCATCC 1249
|||||||||||||||||.||.||.||..|.||.|| ||| ||.||.||
BPUM_1013___y 1204 ATTTCAATGTGGGGCATCGGGCTTCCAATCGCCTA-CTTATTAGGTAT-- 1250
BSNT_01843___ 1250 ACCTCGGTT-----TCGGTCTTGCCGGTATTTGGATTTCTTTTATCGCGG 1294
||.||| |.|||||....||.|||||||||||||||||||..|
BPUM_1013___y 1251 ---TCAGTTTGAGATGGGTCTCATTGGGATTTGGATTTCTTTTATCGTAG 1297
BSNT_01843___ 1295 ATGAATGGGTCCGGGGAATCTTAATGTACAGAAGATGGCGCTCACGTATC 1344
||||||||||..|.||.|||||.|||||.||..|.|||||.|||.|..|.
BPUM_1013___y 1298 ATGAATGGGTAAGAGGCATCTTTATGTATAGGCGGTGGCGTTCAAGGGTT 1347
BSNT_01843___ 1345 TGGATTCAAAAAGGTATGG-----------CGTAA 1368
||||...|| |||.| |.|||
BPUM_1013___y 1348 TGGACGGAA-----TATCGCTTTTCTTCCACATAA 1377
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