Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01844 and BPUM_1014

See Amino acid alignment / Visit BSNT_01844 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_01844___yisR.1.24716.seq
#    -bsequence dna-align/BPUM_1014___yisR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01844___yisR-BPUM_1014___yisR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01844___yisR-BPUM_1014___yisR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01844___yisR
# 2: BPUM_1014___yisR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity:     565/958 (59.0%)
# Similarity:   565/958 (59.0%)
# Gaps:         185/958 (19.3%)
# Score: 1368.5
# 
#
#=======================================

BSNT_01844___      1 ATGCCTCG--------CATCCTGTTTACAGTCCCGCCTTTTCCGGTATTT     42
                     |||..|||        ||     |||||.||.|||||.||.|||||.|.|
BPUM_1014___y      1 ATGAATCGATTTATTACA-----TTTACTGTACCGCCGTTCCCGGTTTAT     45

BSNT_01844___     43 ATCGCAGCTGGGGAAGGGGTTTTTAAAAAAGGAGAAACCCATGT-----G     87
                     |||||..||||..||||.||.|||.|..|||||||||..|||.|     |
BPUM_1014___y     46 ATCGCTTCTGGCAAAGGCGTATTTGATCAAGGAGAAAGACATATCTCTAG     95

BSNT_01844___     88 AAACGTGTATTCTCCGTGTTTGATCTGATATATGTCA-AACAGGGAACGT    136
                     ||.|     |||.|||||||||||||..|.||||||| ||.||||.| |.
BPUM_1014___y     96 AACC-----TTCACCGTGTTTGATCTTCTTTATGTCACAAGAGGGCA-GC    139

BSNT_01844___    137 TATATATAACGGA--AAATGAA---ACATCGTTTTCTGTTGAAGGCGGCG    181
                     |||..||.||.||  |.|.|||   .||||     ..||..|||..||.|
BPUM_1014___y    140 TATGGATCACAGAAGACAGGAAGGCTCATC-----ACGTAAAAGAAGGAG    184

BSNT_01844___    182 AGTACATCTTGCTTTCTCCCGGTCT----------TGAACACTACGGGAC    221
                     |.||.|||.|.||.||.||.|| ||          ||.|||||       
BPUM_1014___y    185 AATATATCATTCTCTCACCTGG-CTTGTCGCATGGTGGACACT-------    226

BSNT_01844___    222 GAAGGGCA-GTGATGAAGCAAC-CTCCTACTAT---TGGCTTCA--CTTC    264
                        .|.|| |.||.||||.||| |    |||||   |||||.||  .|||
BPUM_1014___y    227 ---TGCCATGCGAAGAAGAAACAC----ACTATGAGTGGCTCCATTTTTC    269

BSNT_01844___    265 GA-TGAACATCGATATGAATTTACGGCAAA--GG--GAGGCAGCA-ACTG    308
                     || ||   |||..|.|||.||   |.||||  ||  |||  ||.| ||||
BPUM_1014___y    270 GATTG---ATCCTTTTGAGTT---GACAAATCGGCCGAG--AGAACACTG    311

BSNT_01844___    309 GTCTGAGCTTCAGCAGGAAA--AAGGGAGCTTCGAAGAGCCGGCCCGCTA    356
                     ||.|||..|..|.||  |||  |||..|.|||.|||.|||||||...|||
BPUM_1014___y    312 GTTTGATATGAAACA--AAATCAAGCCACCTTTGAAAAGCCGGCGACCTA    359

BSNT_01844___    357 CGGATTGGCCTTGCCGAGAAAAGGCAAGGTGCAGCGCCCGCAGTTTATGG    406
                     .|.|||...||||||..|.|||||.||.|||.|             |.||
BPUM_1014___y    360 TGAATTTAGCTTGCCCCGTAAAGGAAAAGTGAA-------------AGGG    396

BSNT_01844___    407 CGCA--GCAGTTTGAAAAGCTGATCGATTACTC---TGCGG-----AAA-    445
                     .|.|  |.| ||.|||||||  |.|  ||.|.|   |||||     ||| 
BPUM_1014___y    397 AGAAATGTA-TTAGAAAAGC--ACC--TTGCACAGATGCGGGCCCTAAAT    441

BSNT_01844___    446 ----AC---TCTGATTTGCCGCTCAGAAAGCAAATTTTATTTGCGGAGCT    488
                         ||   |||||..|||||||.|.|||.||..|....||||.|||.||
BPUM_1014___y    442 GATGACGCATCTGAACTGCCGCTGAAAAAACAGCTACAGTTTGAGGAACT    491

BSNT_01844___    489 GATGCTGCATCTTCAAAAAGAAGCGTTCCAAATACCGTCTGCGAAAGAGC    538
                     |.|..|.|||.|.|||||||||||.||.||.||.||...|||.||.|||.
BPUM_1014___y    492 GCTCATTCATTTACAAAAAGAAGCCTTTCATATTCCAAGTGCAAAGGAGA    541

BSNT_01844___    539 GGGTAGCCTGGGAGGCGGCCCGGTA-CTTACAGGAG---CACTATAAGGA    584
                     ..||.||.|..||.|.||..|..|| |||    |||   |||| |.|.||
BPUM_1014___y    542 ATGTCGCTTCAGAAGTGGTTCATTATCTT----GAGCGTCACT-TTATGA    586

BSNT_01844___    585 AAAGACGACAATCAAGGATCTGTCGCTCGC------CCTTCACTACCATC    628
                     |.|.||..|||  |.||||   ..|||.||      .||.|||||.||||
BPUM_1014___y    587 AGAAACTGCAA--ATGGAT---GAGCTTGCAGAGAAACTGCACTATCATC    631

BSNT_01844___    629 AGGATTATGTGAGCCGCTGTATGCAGCAGGTGCTCGGCGTAACTC-CGGC    677
                     ..|||||..|.|...|.||.||||||..||||...||    |||| ||.|
BPUM_1014___y    632 CTGATTACATAACAAGGTGCATGCAGACGGTGTATGG----ACTCACGCC    677

BSNT_01844___    678 A---CAATACACGAACC-------GGGTGAGAATGACGGAAGCGAAGCGT    717
                     |   |||||||..||.|       ||.|||.||.|.|  ||   ||||.|
BPUM_1014___y    678 AAACCAATACATCAATCGTCTCAAGGTTGAAAAAGCC--AA---AAGCAT    722

BSNT_01844___    718 -CTTTTATCCTCTACAAATGATAAAATGG--GCGTTATTGCGGAAACGGT    764
                      |||   .||||.||.||||||.||||.|  |||  ||.||.|||..|||
BPUM_1014___y    723 GCTT---GCCTCAACGAATGATCAAATCGCAGCG--ATCGCTGAACAGGT    767

BSNT_01844___    765 CGGAATGGAAGATCCGACATACTTTTCAAAACTCTTTAAGCAGATAGAAG    814
                     .||.||.||.||.||.||.||.|||||.||.||.|||..|||.|..||||
BPUM_1014___y    768 AGGCATTGACGACCCTACGTATTTTTCTAAGCTGTTTCGGCAAAACGAAG    817

BSNT_01844___    815 GCATTTCACCAATTGAATACCGGAAAATTGTCAGC-CG------GAAAGT    857
                     ||||..||||.||.||.||||        ||||.| ||      |||.|.
BPUM_1014___y    818 GCATGACACCTATCGAGTACC--------GTCATCTCGCAAAAAGAACGA    859

BSNT_01844___    858 TCAA-TAA    864
                     .||| |||
BPUM_1014___y    860 CCAAGTAA    867


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