Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00924 and BPUM_1020

See Amino acid alignment / Visit BSNT_00924 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:37
# Commandline: needle
#    -asequence dna-align/BSNT_00924.1.24716.seq
#    -bsequence dna-align/BPUM_1020.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00924-BPUM_1020.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00924-BPUM_1020.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00924
# 2: BPUM_1020
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1804
# Identity:     866/1804 (48.0%)
# Similarity:   866/1804 (48.0%)
# Gaps:         668/1804 (37.0%)
# Score: 1529.5
# 
#
#=======================================

BSNT_00924         1 ATGGAATTATCTTTTCTACCTAAA------AACACATTCATAGACCCTAA     44
                     |||.|||.|.||          ||      |..|.||||||      ||.
BPUM_1020          1 ATGCAATCAACT----------AAGGCTCCAGTAGATTCAT------TAT     34

BSNT_00924        45 TGGACATAATACAAATGAAGTAAAAAGCTT-------AGTCGATCAATTA     87
                     |        ||.||||.||  |...|||||       ||||..||.|  |
BPUM_1020         35 T--------TATAAATCAA--AGCCAGCTTGGAAGAGAGTCCTTCCA--A     72

BSNT_00924        88 GCCGGATTAGTTATTGA-ACAT---TCGAGTCATGCT-------------    120
                     ||      .|.|.||.| ||||   ||||  || |||             
BPUM_1020         73 GC------GGCTCTTCATACATCTATCGA--CA-GCTTACTGGATCAATG    113

BSNT_00924       121 GCAAAGAGAGACA-CACTGCCTGCTGTGGAGTCTT---TTG---ATTA--    161
                     |||||.|||.||| .||  |.|.|.|||||.|.||   |.|   ||||  
BPUM_1020        114 GCAAAAAGACACAGGAC--CTTACAGTGGAATATTGCCTGGGAAATTAGC    161

BSNT_00924       162 ---TAGT--------GATATACCCGA----AA----CTGGTATAGAA---    189
                        .|||        |.||| .||||    ||    ||||   ||||   
BPUM_1020        162 GGCAAGTGTCGAATCGCTAT-TCCGATTTCAACCGTCTGG---AGAATCT    207

BSNT_00924       190 ATTGAAAATATCTTGGTAAACCTGCAGGGTATCATCAAAA----------    229
                     ||||||..|.|||         |.||.|.|||    ||||          
BPUM_1020        208 ATTGAATCTGTCT---------TTCAAGATAT----AAAAGAGCATCTTT    244

BSNT_00924       230 -AC------TCAATGA--------ATCCTCAAAACCCAAGATATATGGGC    264
                      ||      |.|.|||        |||||.||..|          |.|||
BPUM_1020        245 TACCGCATTTGATTGATGTATCGCATCCTAAATGC----------TTGGC    284

BSNT_00924       265 -CATATGGATTCAATCCCCACTCTCATTTCATG--CTTG-----------    300
                      |||.||.|||  .|||.| |.|||| |||.||  ||||           
BPUM_1020        285 ACATCTGCATT--GTCCAC-CGCTCA-TTCCTGCACTTGCCGCAGAGGTG    330

BSNT_00924       301 --GGTGACTTCAT------AAGCAGT----TCCCTTAATAACAATATGCT    338
                       |||||.|||.|      ||.||.|    |||.||.||  |||..||.|
BPUM_1020        331 ATGGTGAGTTCCTTTAACCAATCAATGGACTCCTTTGAT--CAAAGTGGT    378

BSNT_00924       339 AAGCCTTGAGATGTCCCCTGTTTT--TTCAAAAGTGGAAGCACAGTTACT    386
                     |    |||         ||..|||  ||     |.|||||          
BPUM_1020        379 A----TTG---------CTTCTTTGGTT-----GAGGAAG----------    400

BSNT_00924       387 CAAAACC---ATTGCCCGTAT-------GTTTGGATATGATGA-TAAGTC    425
                      |||.||   |.||.|  |||       ||||...||||..|| .||| |
BPUM_1020        401 -AAATCCTCAAGTGGC--TATGTGCAAAGTTTTCTTATGTCGACCAAG-C    446

BSNT_00924       426 AGGAGGAGTGA---TGACAAGCGGCGGAAGTCTCGCTAATCTGCATGCAC    472
                     ||..||   ||   |.||||||||.||||..|...|||| ||.||||...
BPUM_1020        447 AGATGG---GACATTTACAAGCGGTGGAACCCAATCTAA-CTACATGGGG    492

BSNT_00924       473 TTAC-AGTAGCAAGAAAT-CATCAATTAAATATGAAAAAGACA-------    513
                     ||.| ..|.||.|||.|| |.|   ||   |.|| ||||.|||       
BPUM_1020        493 TTGCTTCTGGCGAGAGATGCCT---TT---TGTG-AAAACACATGGCAGT    535

BSNT_00924       514 GGTATCTTC--------GGACTT----------TCTGGACAGCCTGTCA-    544
                     ||.||.|||        || |||          ||| .||.||.||..| 
BPUM_1020        536 GGAATGTTCAGCAGAAAGG-CTTACCAAGTGAATCT-CACCGCATGAGAA    583

BSNT_00924       545 -TCTTTGTTTCG--GACGTCAGCCATACCTCCCTGCAC-------AAAGC    584
                      |||||| .|||  ||        || .|||.||.|||       |||.|
BPUM_1020        584 TTCTTTG-CTCGAAGA--------AT-GCTCACTTCACTGTGAAAAAATC    623

BSNT_00924       585 AGCTATGATCC----TAGGTTTAG--------------GTACCTCCAGTA    616
                     .|||    |||    |||||||||              |||   |.||| 
BPUM_1020        624 TGCT----TCCCAGTTAGGTTTAGGAGAGCAGGCAGTTGTA---CTAGT-    665

BSNT_00924       617 TCATTCCGGTAAAAAGCAACAATCTGGCCCGCATGGATATTCATGATTTA    666
                           ||..|.|.|..||||.|    .|||.|||||..|..||||||| 
BPUM_1020        666 ------CGAGACAGATGAACATT----ACCGAATGGACGTCAATGATTT-    704

BSNT_00924       667 GAAATAAAAA-----TTCATCGTGCAAAGAG-TGAAGG-CCACA------    703
                     |||| ||.||     ||           ||| |||||| .||.|      
BPUM_1020        705 GAAA-AAGAAGCTGGTT-----------GAGTTGAAGGAGCAGAACTTGC    742

BSNT_00924       704 TTCCATTTGCTGTTGTCGCAACTGCCGGAACAACTGTGACAGGAAGCATA    753
                     |.||.|||||.||.||.||.|||..|||.|||||.|              
BPUM_1020        743 TGCCTTTTGCGGTAGTAGCCACTTGCGGGACAACGG--------------    778

BSNT_00924       754 GATCCAATTTTGCCA--ATTG--CCAG-----------AATCACA-----    783
                           ||||||.||  ||||  ||||           .||.|||     
BPUM_1020        779 ------ATTTTGGCAGTATTGACCCAGTTCGAGAGGTATATGACATCGTC    822

BSNT_00924       784 AAGGAAAACGGACTGTGGCTGCATGTAGATGCAGCATATGGCGGCGCTTT    833
                     |||..|.||||.||||||.|.||.|.||||||.||.||.|||||.||   
BPUM_1020        823 AAGCCATACGGTCTGTGGATTCACGCAGATGCTGCCTACGGCGGAGC---    869

BSNT_00924       834 AATTTTTTCT----GAAAAATATCGTGATAAACTGAG-TGGTATCGAAAT    878
                      |.||.|..|    ||||..||.||..|.||| |.|| .|||||.||..|
BPUM_1020        870 -ACTTGTATTAAGCGAAACCTACCGAAAGAAA-TTAGACGGTATTGAGCT    917

BSNT_00924       879 GGCTGATTCCATTACTTTTAATCCGCAAAAGTGGATGTAC-ATCACAAAG    927
                     .||||||||.||.||                  |||..|| .|||.||| 
BPUM_1020        918 TGCTGATTCAATCAC------------------GATTGACTTTCATAAA-    948

BSNT_00924       928 ACCTGTGCAATGACTCTTTTTAA----AAATCGTG---------------    958
                            ||||     |||.|.|    |.|||.||               
BPUM_1020        949 -------CAAT-----TTTATCAGCCGATATCCTGCGGAGCATTTTTGCT    986

BSNT_00924       959 -AA--ATACTTGAAACTGATTTCCGT--------ATATC-TGCCCCTTAT    996
                      ||  |||    |||...||||..||        .|||| |||...||||
BPUM_1020        987 AAAGGATA----AAAGCCATTTTGGTTTGATCAATTATCATGCGGATTAT   1032

BSNT_00924       997 ATGAAT---------GA--AACT-GATTTTATT---AATCTGGGTGAAT-   1030
                     .|.|||         ||  |||| |||..||||   .|||| .||.||| 
BPUM_1020       1033 CTTAATCCAAAGGAAGACGAACTCGATGGTATTCTACATCT-CGTCAATA   1081

BSNT_00924      1031 TAGGTGTTCAAGGCACGCGGCATGCTGATATTTTAAAATTATATTTATCA   1080
                     .|..|||.|||...|||||.|....||||..|.|.||||||..|.|.||.
BPUM_1020       1082 AATCTGTCCAAACGACGCGCCGGTTTGATGCTCTCAAATTACTTCTCTCT   1131

BSNT_00924      1081 CTTC----AACACGTTGGAACAAAAGGAT----ACA-ACCAGTTG---AT   1118
                     ||||    ||    |||||..|.||||||    |.| |.|| |||   ||
BPUM_1020       1132 CTTCGTCTAA----TTGGAGAAGAAGGATTTGGAGAGATCA-TTGACCAT   1176

BSNT_00924      1119 A--AATAAAAGTTTCGCACTAAACGAAGAATG----------TATAGA-A   1155
                     |  |.|.|   |||.|||       |||.|||          |||.|| |
BPUM_1020       1177 ACCATTCA---TTTTGCA-------AAGGATGTGGCTGAGCTTATTGAGA   1216

BSNT_00924      1156 CAAGTGAAACAGCGGCCTTTTCTTGAGCTT-TATTG--------TGAGCC   1196
                     .||.|||                |||.||| .|.||        ||||||
BPUM_1020       1217 GAAATGA----------------TGACCTTGAAGTGATCAACCCTGAGCC   1250

BSNT_00924      1197 AGATA-CAAACATCTGCTGT----TTCCGAGGTATACCGCATGACATTGA   1241
                     |||.| |||     |||.||    ||||||..||.|   .|||||....|
BPUM_1020       1251 AGAAATCAA-----TGCAGTTGTGTTCCGATTTAAA---GATGACCACCA   1292

BSNT_00924      1242 AAAGGA-----TCAATGGGATAACTGGAACCTGGA-ACTGCAGCAGTTCT   1285
                     ||..||     |||||...||.|.|  .||| ||| ||            
BPUM_1020       1293 AACAGATGACGTCAATAAAATCATT--CACC-GGACAC------------   1327

BSNT_00924      1286 TATT-GAAAGAAGAAAATATCTTCTTGTCATTGCCGGAATGGAAAGGAAA   1334
                     |||| .|||||.|||     ||.| |||||||||            ||||
BPUM_1020       1328 TATTCAAAAGAGGAA-----CTGC-TGTCATTGC------------GAAA   1359

BSNT_00924      1335 CCGCTGGCTGCGTGCTGTGTTCCTCAATCCAT--TTATAACAGGTTCGCT   1382
                     .|..||| |.||||        .|||| .|||  |||.||    |||.||
BPUM_1020       1360 ACAGTGG-TTCGTG--------GTCAA-ACATGCTTAAAA----TTCACT   1395

BSNT_00924      1383 T--ATAAA----------------ACAAATGTTCAGAAAAAT--------   1406
                     |  .||||                |||.||.||.|| .||||        
BPUM_1020       1396 TTGTTAAATCCGAGAACGACAATCACACATATTGAG-GAAATCCTTTCTG   1444

BSNT_00924      1407 AGATCAATTTTAT---GATCAAT-ATAAACAA-----------ATT--GT   1439
                     |.|||..|..|||   ||||..| |||..|||           |.|  ||
BPUM_1020       1445 ACATCGTTGATATCGGGATCGCTCATATTCAATCCGGGAGGGTACTACGT   1494

BSNT_00924      1440 TTAA   1443
                     |.| 
BPUM_1020       1495 TGA-   1497


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