Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01861 and BPUM_1028

See Amino acid alignment / Visit BSNT_01861 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:22
# Commandline: needle
#    -asequence dna-align/BSNT_01861___yitK.1.24716.seq
#    -bsequence dna-align/BPUM_1028___yitK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01861___yitK-BPUM_1028___yitK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01861___yitK-BPUM_1028___yitK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01861___yitK
# 2: BPUM_1028___yitK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 509
# Identity:     377/509 (74.1%)
# Similarity:   377/509 (74.1%)
# Gaps:          34/509 ( 6.7%)
# Score: 1362.0
# 
#
#=======================================

BSNT_01861___      1 ATGGCAAAAGAAAGCTCATTTGATATTGTATCCAAGGTGGAATTGCCTGA     50
                     |||||||||||||||||||||||.||||||||.|||||.|||.||||.||
BPUM_1028___y      1 ATGGCAAAAGAAAGCTCATTTGACATTGTATCGAAGGTTGAACTGCCAGA     50

BSNT_01861___     51 AGTGCAAAACGCAATCCAAATCGCACTGAAGGAAATCAGTACCCGATATG    100
                     .|||||||||||..|.|||...||.||.||||||||.|..|..||.||||
BPUM_1028___y     51 GGTGCAAAACGCCGTTCAAGCAGCGCTCAAGGAAATTAAAAATCGTTATG    100

BSNT_01861___    101 ACTTTAAAGGCAGCAAAAGCGACATTTCTTTAGATAAAGAGGAGCTGGTC    150
                     |.||||||||.||||||||.||.||||||.|.||.|||||.|||||.||.
BPUM_1028___y    101 ATTTTAAAGGAAGCAAAAGTGATATTTCTCTTGAAAAAGAAGAGCTCGTG    150

BSNT_01861___    151 CTCGTTTCCGATGACGAATTCAAATTAAGC-----CAGCTGAAAGATGTG    195
                     |||.|.||.|||||.||.|||     ||||     ||.||.||||||||.
BPUM_1028___y    151 CTCATCTCTGATGATGATTTC-----AAGCTGGAGCAACTAAAAGATGTA    195

BSNT_01861___    196 CTGGTCAGCAAA-TTGATTAAACGAAACGTACCGACAAAAAACATTGAGT    244
                     ||.||.| |||| .||||.||||||||.||.||.||.||||||||.||.|
BPUM_1028___y    196 CTTGTGA-CAAAGCTGATCAAACGAAATGTTCCAACTAAAAACATCGACT    244

BSNT_01861___    245 ACGGCAAGGTTGAAAACGCGTCA-------GGCGGAACGGTGCGCCAGCG    287
                     ||||.|      |||.||.| ||       ||||||||.||.||||||||
BPUM_1028___y    245 ACGGAA------AAACCGAG-CATGCCCTTGGCGGAACCGTACGCCAGCG    287

BSNT_01861___    288 CGCAAAGCTTGTTCA-AGGCATTGACAAGGACAACGCAAAAAAAATCAAT    336
                     |||.|||| ||.||| .||.|||||..||||||||||.|||||.||||||
BPUM_1028___y    288 CGCGAAGC-TGATCAGCGGAATTGATCAGGACAACGCCAAAAAGATCAAT    336

BSNT_01861___    337 ACGATCATCAAAAACTCCGGACTGAAAGTAAAGTCTCAGGTGCAGGATGA    386
                     .|..||||.||..|.|||||..|.|||||.||.||.||..|.||.|||||
BPUM_1028___y    337 GCACTCATTAAGCAATCCGGCATCAAAGTGAAATCACAATTTCAAGATGA    386

BSNT_01861___    387 TCAAGTGCGTGTCACCGGAAAAAACAAAGATGACCTGCAGCA---GATTA    433
                     .|||||||||||.||.||||||||.||||||||..|.||..|   |||| 
BPUM_1028___y    387 CCAAGTGCGTGTAACAGGAAAAAATAAAGATGATTTACAAGAAGTGATT-    435

BSNT_01861___    434 TCTCAGCTGTGCGGGGAGCAGATCTGCCAATTGACGTTCAATTTATAAAT    483
                     ||||  .|.||||....||||||.|.||.|||||||||||||||||||||
BPUM_1028___y    436 TCTC--TTATGCGTAAGGCAGATTTACCGATTGACGTTCAATTTATAAAT    483

BSNT_01861___    484 TTCAGATAA    492
                     ||..|||||
BPUM_1028___y    484 TTTCGATAA    492


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