Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01868 and BPUM_1035

See Amino acid alignment / Visit BSNT_01868 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01868.1.24716.seq
#    -bsequence dna-align/BPUM_1035.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01868-BPUM_1035.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01868-BPUM_1035.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01868
# 2: BPUM_1035
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 211
# Identity:     135/211 (64.0%)
# Similarity:   135/211 (64.0%)
# Gaps:          32/211 (15.2%)
# Score: 427.5
# 
#
#=======================================

BSNT_01868         1 ATGAGAAATGAACTGTTTCAGCAGGCAAAATCATTTGTTCAACAGGC---     47
                     .|||||||.|||||.|||.|.||.||.|||||||||....||.|.||   
BPUM_1035          1 GTGAGAAACGAACTTTTTGATCAAGCCAAATCATTTACGGAAGAAGCTCT     50

BSNT_01868        48 -----GGTCATGGTGACAAACGGCTTTGAGGAAGGCGATCAGGAG-----     87
                          ..||||  |..||...||.||.||     ||| |||.|||     
BPUM_1035         51 TACTTCTTCAT--TTTCATCTGGGTTAGA-----GCG-TCAAGAGGCGGT     92

BSNT_01868        88 CAAGCGATTCTGAGAGCCAAAAATGCTGTATCTTCTGCGTATGCCAATTC    137
                     |||.|        |||||||||||||.|||||||||||.|.|||||||||
BPUM_1035         93 CAAAC--------GAGCCAAAAATGCCGTATCTTCTGCATTTGCCAATTC    134

BSNT_01868       138 GACAGATGCGGAACGTCAACAGCTGCATCAATTTCAAAATCAGCTGGACA    187
                     |||||||||||||.|..|.|||||||||...||.|||.|...|||.||..
BPUM_1035        135 GACAGATGCGGAAAGAAACCAGCTGCATACCTTCCAAGACTTGCTCGATG    184

BSNT_01868       188 AACTCCAATAA    198
                     |.|||.||   
BPUM_1035        185 ATCTCTAA---    192


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