Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01876 and BPUM_1040

See Amino acid alignment / Visit BSNT_01876 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01876___yitY.1.24716.seq
#    -bsequence dna-align/BPUM_1040___yitY.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01876___yitY-BPUM_1040___yitY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01876___yitY-BPUM_1040___yitY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01876___yitY
# 2: BPUM_1040___yitY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1557
# Identity:     988/1557 (63.5%)
# Similarity:   988/1557 (63.5%)
# Gaps:         249/1557 (16.0%)
# Score: 2947.5
# 
#
#=======================================

BSNT_01876___      1 ------------------TTGCTTGCATTCGCGCTTTGTACTGG----CG     28
                                       |.|.|||  |||     ||.||.|||    |.
BPUM_1040___y      1 ATGAAACGAAAATGGTTATGGATTG--TTC-----TTTTAATGGGATACA     43

BSNT_01876___     29 CGTATGCGGCCCTGTTTGCGT--------ACTCTGTGAACTCAGAGCAAA     70
                     |   |||.||..|.|||||.|        |.|| ||||    .||||   
BPUM_1040___y     44 C---TGCTGCATTTTTTGCATCAATCACCATTC-GTGA----GGAGC---     82

BSNT_01876___     71 AAACAGACACAAGCGA-------GA-----TGACGGATGTCAGCGGCCTG    108
                     ||..|.|||.||||.|       ||     |.||.||||||||....||.
BPUM_1040___y     83 AAGTACACAAAAGCAAAGATCTTGAAGCCTTCACAGATGTCAGTCATCTC    132

BSNT_01876___    109 ATGCCTGTAAAAATAAAGCAGACAGTGAAAGGGC-----AGGAAGAGGAA    153
                     ||||||||.||||||||          |||.|.|     |||||.||.| 
BPUM_1040___y    133 ATGCCTGTCAAAATAAA----------AAAAGTCGTTCAAGGAAAAGAA-    171

BSNT_01876___    154 ACGCTCATTGACACAGTCAAAGAGGCA--AATCGAA---AAAACATAAAA    198
                           ||.|||||..|.|||||.|.|  ||..|||   |||.||.||||
BPUM_1040___y    172 ------ATAGACACGTTAAAAGAAGTATTAAAAGAAGCGAAAGCAAAAAA    215

BSNT_01876___    199 -------ATTTCAATCGCCGGGGCCCAGCACTCCATGGGCGGCCATACAT    241
                            ||.|||||.||.|||...|||||...||||||.|||||.||.|
BPUM_1040___y    216 GTTGCCGATATCAATTGCAGGGAAACAGCATAGCATGGGTGGCCACACGT    265

BSNT_01876___    242 ATTATGAGGACGGCATCGTTCTCGACATGACGGGCTACAA-----CAAAA    286
                     |||||||..|.||||||||.||.||.|||||||     ||     |.|.|
BPUM_1040___y    266 ATTATGAAAATGGCATCGTGCTTGATATGACGG-----AATTTCGCCAGA    310

BSNT_01876___    287 TCCTGTCACTCGATCAAGAGAAGAAAACCATCAGGGTGCAAAGCGGTGCA    336
                     |..|..||.|.|||.||.|.||||||||.||..||||.|||||.||||..
BPUM_1040___y    311 TTTTAGCATTTGATGAAAAAAAGAAAACGATTCGGGTCCAAAGTGGTGTG    360

BSNT_01876___    337 ACGTGGAATGATATCCAGAAATACGTGAATCCATACGGACTCGCGGTAAA    386
                     ||.|||.||||.||.||.|.|||.|||||.|||||.||.||.||.||.||
BPUM_1040___y    361 ACATGGGATGACATACAAACATATGTGAACCCATATGGTCTTGCTGTGAA    410

BSNT_01876___    387 AGTCATGCAGTCACAAAACATTTTTACAATCGGCGGATCTCTCAGCGCAA    436
                     .||.|||||.||.|||||.||.||||||||.|||||||||.|.||.||||
BPUM_1040___y    411 GGTGATGCAATCGCAAAATATCTTTACAATTGGCGGATCTTTAAGTGCAA    460

BSNT_01876___    437 ATGCACACGGACGTGATATTCGCTACGGCTCGCTGATTGATACAGTCAAA    486
                     |.|||||.||||||||.|||||.|||||.||.||.|||||.|||||....
BPUM_1040___y    461 ACGCACATGGACGTGACATTCGTTACGGGTCACTCATTGACACAGTTCGT    510

BSNT_01876___    487 TCATTTCGGCTTTTAAAAGCTGACGG-GACGATTATCACTGTCACTCCAA    535
                     ||.|||.||||.||||||||.||.|| || ||||.||||.||.|..||..
BPUM_1040___y    511 TCCTTTAGGCTGTTAAAAGCAGATGGCGA-GATTGTCACAGTGAAGCCGG    559

BSNT_01876___    536 AAGATGATTTGTTTACGGCGGTCATCGGAGGGTACGGCCTTTTTGGCGTG    585
                     ..|||||||||||.||.||||||||.|||||.|||||..|.||.||.||.
BPUM_1040___y    560 GCGATGATTTGTTCACTGCGGTCATTGGAGGATACGGTTTATTCGGTGTC    609

BSNT_01876___    586 ATTCTTGATGTAACGCTTGAGC------TGACAGATGATGAGCTGTATGT    629
                     |||.|.||||      ||||||      |.|||.|.|||||.||.|||..
BPUM_1040___y    610 ATTTTAGATG------TTGAGCTTTCTTTAACAAAAGATGAACTATATAA    653

BSNT_01876___    630 CATGAAGACAGAAAAAA------TGAATTAC----AGCACATACTCAGAC    669
                     .|||.||||      ||      |..|||||    ||    ||..|.||.
BPUM_1040___y    654 AATGGAGAC------AACCTCTCTAGATTACGATGAG----TATACGGAT    693

BSNT_01876___    670 TATTTTTCAAAGCATGTAAAAGGAAATCCAGATGTCCGAATGCATCTGGC    719
                     ||||||..|||||||||.|||..||||..|||.||.||.||||||||.||
BPUM_1040___y    694 TATTTTCAAAAGCATGTGAAACAAAATAAAGAAGTACGCATGCATCTTGC    743

BSNT_01876___    720 GCGAATTTCAACAGCGAAAA--AAGGATTTCTGAAAGACATGTATGTCAC    767
                     ..||||.|||||||||||||  ||  .|||.|||||||.||||||||.||
BPUM_1040___y    744 CAGAATCTCAACAGCGAAAACCAA--CTTTTTGAAAGAGATGTATGTAAC    791

BSNT_01876___    768 GAATTACGTATTGGCTGA--TCATCAGGATCAAC-------TGCCATCAT    808
                     ||||    ||||..||.|  |||       ||||       || .|||||
BPUM_1040___y    792 GAAT----TATTCCCTCAATTCA-------CAACAAGAGATTG-AATCAT    829

BSNT_01876___    809 A-CAGCGATCTCAAAGAAGATGA----GT-ATACGGGAGCCA--CAAAGT    850
                     | || .||.||.|||||.|||.|    || ||      ||||  ||||.|
BPUM_1040___y    830 ATCA-AGAGCTGAAAGAGGATCAACTCGTCAT------GCCACTCAAATT    872

BSNT_01876___    851 T-TGCACTCGGTTTGTCAAGACGGTATGA-ATGGGGCAGGAATTGGCTGT    898
                     | ||  ||.|||.|.||||||.|.|.||| ||||||.|.| ||..|||.|
BPUM_1040___y    873 TATG--CTTGGTCTTTCAAGAAGATTTGATATGGGGAAAG-ATCTGCTCT    919

BSNT_01876___    899 GGGA----CACACAGCAATCCTATTTCCTGAGCCAAAACG-GCA-CAGAG    942
                     ||.|    || |.||.|   .|||||||..||.|||||.| .|| |.|| 
BPUM_1040___y    920 GGAATTTGCA-AAAGAA---GTATTTCCAAAGTCAAAATGATCAGCTGA-    964

BSNT_01876___    943 ATTTCAC--GCAATAACGTCATGCGGTCCGAATCAAAGTTTCTTGAGTAT    990
                        ||||  |.||.||.||.|||||.||.||.||....|||.|.||.|||
BPUM_1040___y    965 ---TCACTAGAAACAATGTGATGCGCTCAGATTCTGCTTTTTTAGAATAT   1011

BSNT_01876___    991 GAAAACAATGA--CA-ACACAGATGTTTTGCAAGAATACTTTGTGCCCGT   1037
                     |||   |||||  || |.||||||||..|.||.|||||.||.||.||.||
BPUM_1040___y   1012 GAA---AATGAGTCAGATACAGATGTACTTCAGGAATATTTCGTCCCAGT   1058

BSNT_01876___   1038 GAAGGAGTATGGGTCCTATATTGATGACCTGAG---------ACAAACGC   1078
                     |.|....|.|.|..|.|||||.||||||.||||         ||||    
BPUM_1040___y   1059 GGACCGCTTTCGTGCGTATATCGATGACATGAGAAGTTATTTACAA----   1104

BSNT_01876___   1079 TGTCGGACGAAGATCTGAACCTGCTGAACATTACGATCCGCTACGTGCAG   1128
                          .|.|||||..|||||.|..||||.||.||.||.||||||||.||.
BPUM_1040___y   1105 -----CAGGAAGAATTGAACTTAATGAATATCACAATACGCTACGTACAA   1149

BSNT_01876___   1129 AAAAATGAAAAGGCCGACCTTTCCTATGCGAAGGACGATATGTTTTCGCT   1178
                     |||||||||||.||.||.||.||.||||||||.||.|||||||||.|.||
BPUM_1040___y   1150 AAAAATGAAAAAGCGGATCTCTCATATGCGAAAGAAGATATGTTTGCCCT   1199

BSNT_01876___   1179 CGTGCTATTAATAAACGAGGGCTTTTCA-AAAGAAGACCAGGCAGATACT   1227
                     .||.||.|||.|.||..|.|| ||||.| ||||||||...||||||..|.
BPUM_1040___y   1200 TGTTCTTTTAGTGAATTATGG-TTTTGAGAAAGAAGAGACGGCAGAAGCA   1248

BSNT_01876___   1228 GCCCGAATCATCAGGCACATGACAGACGTTGCCATCAAGC-ACGGC----   1272
                     |..||.||||||.||||.||||||||      .||||.|| .||||    
BPUM_1040___y   1249 GAGCGGATCATCCGGCAAATGACAGA------TATCACGCTTCGGCACCA   1292

BSNT_01876___   1273 -GGCAGCTATTATCTGCCTTATATGACCTACCAGACAAAAGCGCAAATGA   1321
                      ||.||||||||..|.||.||.|||.|.||.||.||.||.||.|||||||
BPUM_1040___y   1293 TGGAAGCTATTACTTACCGTACATGCCTTATCAAACGAAGGCACAAATGA   1342

BSNT_01876___   1322 GACAGGCATATCCGAAAAGTGAAGCGTTTTTTC---AGAAAAAACGAACC   1368
                     ..|.|||.|||||.||||..||.|..|||||.|   |||||||.|.|.| 
BPUM_1040___y   1343 AGCGGGCCTATCCTAAAACCGATGTATTTTTCCAAAAGAAAAAGCAAGC-   1391

BSNT_01876___   1369 TATGACCCGGATGAGCGCTTTATGAATTACTTTTATCAGAGGT---ATAA   1415
                       .||.||.||.|...|.|||||.||||||||||||.|.||||   |||.
BPUM_1040___y   1392 --AGATCCAGAAGGTAGGTTTATCAATTACTTTTATGAAAGGTACAATAC   1439

BSNT_01876___   1416 ATAA---   1419
                     |.||   
BPUM_1040___y   1440 ACAATGA   1446


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.