Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01880 and BPUM_1043

See Amino acid alignment / Visit BSNT_01880 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence dna-align/BSNT_01880___argJ.1.24716.seq
#    -bsequence dna-align/BPUM_1043___argJ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01880___argJ-BPUM_1043___argJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01880___argJ-BPUM_1043___argJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01880___argJ
# 2: BPUM_1043___argJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1285
# Identity:     881/1285 (68.6%)
# Similarity:   881/1285 (68.6%)
# Gaps:         128/1285 (10.0%)
# Score: 2933.0
# 
#
#=======================================

BSNT_01880___      1 ATGATTCAGTTAAGTGAAGATCAA--ATTGTAAAAGTAACAGGTGATGTA     48
                     ||||||.|.||.|.||||.|  ||  |||||.|||.|||..|||||.|||
BPUM_1043___a      1 ATGATTGAATTGAATGAAAA--AAGCATTGTTAAAATAAACGGTGACGTA     48

BSNT_01880___     49 TCCTCGCCAAAAGGGTTTCAGGCAAAGGGTGTGCATTGCGGGCTGCGCTA     98
                     |||||.||||||||.|||.|.||||||||..|.|||...||..|.||.||
BPUM_1043___a     49 TCCTCACCAAAAGGCTTTGAAGCAAAGGGGATTCATATTGGATTACGGTA     98

BSNT_01880___     99 CTCGAAAAAAGACCTCGGCGTCATTATCAGCGAGACACTGGCTGTGAGCG    148
                     .||.|||||||||||.||..|.||..||||.||....|.|||.|.|||.|
BPUM_1043___a     99 TTCAAAAAAAGACCTTGGACTGATCGTCAGTGAAGTGCCGGCAGCGAGTG    148

BSNT_01880___    149 CAGCAGTTTATACCCAAAGCCACTTTCAGGCTGCTCCGATCAAAGTGACA    198
                     |.||.|||||.||.||||||||.|||||.|||||.||..||.||||.||.
BPUM_1043___a    149 CGGCGGTTTACACACAAAGCCATTTTCAAGCTGCGCCTCTCCAAGTCACT    198

BSNT_01880___    199 CAAGACAGCTTAAAGCACGGACCGAC------ACTGAAAGCCGTTATCGT    242
                     ||..|.||||||||      |..|||      |.|.||||..||.||.||
BPUM_1043___a    199 CAGAAAAGCTTAAA------AAAGACAGGGCAATTAAAAGGTGTCATTGT    242

BSNT_01880___    243 CAACAGTGCCATTGCCAATGCCTGCACGGGAGAACAAGGCCTAAAGGACG    292
                     |||.|||||.||.||||||||.||.||.||.||.|||||..|.||.||||
BPUM_1043___a    243 CAATAGTGCTATCGCCAATGCATGTACCGGTGAGCAAGGTTTGAAAGACG    292

BSNT_01880___    293 CATACACAATGCGGGAGAGCTTTGCTTCACAGCTTG-GCA----------    331
                     |||||..|||||.||              ||||.|| |||          
BPUM_1043___a    293 CATACGAAATGCAGG--------------CAGCCTGTGCAGATATGTTAG    328

BSNT_01880___    332 ---TTGAGCCGGAGCTT--GTCGCTGTTTCATCAACGGGTGTCATCGGCG    376
                        |.||.||.||  ||  .|.||||||||.||.||.|||||.||.||.|
BPUM_1043___a    329 GGGTAGAACCTGA--TTACATTGCTGTTTCTTCTACTGGTGTTATTGGAG    376

BSNT_01880___    377 AGCATTTAGACATGGAAAAAATCCACGCGGGGATCGAGCTGCTGAAAGGA    426
                     ||..|.|.||.|||||.||||||.|....||.|||...|.||||||||.|
BPUM_1043___a    377 AGTGTCTGGATATGGATAAAATCAAAAAAGGCATCACTCAGCTGAAAGAA    426

BSNT_01880___    427 ACACCTGCGGGATCAGGCGATTTTGAGGAAGCAATTTTAACAACTGATAC    476
                     .||...||.|||...||..|||||||.||.||.||.|||||.||.||.||
BPUM_1043___a    427 GCAAAAGCAGGAAATGGTCATTTTGAAGAGGCCATCTTAACGACAGACAC    476

BSNT_01880___    477 GGTGATCAAGCAGACGTGCTATGAA--------CTGGCAATCGGCGGCAA    518
                     .||.||.||..|.||        ||        |||.|.||...||||||
BPUM_1043___a    477 AGTCATTAAAAACAC--------AACATACACCCTGACGATAAACGGCAA    518

BSNT_01880___    519 A-ACAGTCACGATCGGCGGAGCGGCCAAAGGCTCAGGGATGATACACCCG    567
                     | |.|.||.| ||....||.||.||.||.|||||.||.|||||.||.|||
BPUM_1043___a    519 AGAGATTCTC-ATTTCAGGTGCAGCGAAGGGCTCTGGCATGATTCATCCG    567

BSNT_01880___    568 AACATGGCCACGATGCTGGGATTTGTGACAACTGACGCGGCAA---TCGA    614
                     ||||||||.||.|||||.||.||.||||||||.||   .||||   ||||
BPUM_1043___a    568 AACATGGCAACAATGCTTGGTTTCGTGACAACGGA---TGCAAATGTCGA    614

BSNT_01880___    615 AGAAAAAGCGCTGCAAAAGGCGCTTCGAGAAATCACTGACGTTTCATTTA    664
                     |.||.||||.||.|||||.||.||.||.||.||.|||||.||..|.||||
BPUM_1043___a    615 ACAAGAAGCTCTTCAAAACGCACTGCGTGATATTACTGATGTGACCTTTA    664

BSNT_01880___    665 ACCAAATCACAGTTGACGGAGAAACATCCACGAACGATATGGTATTAGTT    714
                     |.|||||.||.||.||||||||||||||.||.||||||||||||.|.||.
BPUM_1043___a    665 ATCAAATTACTGTCGACGGAGAAACATCGACAAACGATATGGTACTCGTG    714

BSNT_01880___    715 ATGGCGAATGG-CTGCGCCGAAAACG-AGTGCCTGACAGAAGACCATCCA    762
                     |||||.||||| .|| ||.|||||.| ||| .||.|..|||||.||||||
BPUM_1043___a    715 ATGGCAAATGGTATG-GCAGAAAATGAAGT-TCTCAATGAAGAGCATCCA    762

BSNT_01880___    763 GACTGGCCGGTCTTTAAAAAA-----ACACTCTTGCTCACTTGTGAGGAT    807
                     ||.||||||.|.||.|||.||     |.|     |||..|||||||||||
BPUM_1043___a    763 GAATGGCCGTTGTTCAAAGAAGGGTTAAA-----GCTAGCTTGTGAGGAT    807

BSNT_01880___    808 CTGGCTAAAGAGATTGCCAGAGACGGAGAAGGCGCGACAAAACTAATTGA    857
                     ||.||||||||||||||.||||||||||||||.||.||.|||.|||||||
BPUM_1043___a    808 CTTGCTAAAGAGATTGCAAGAGACGGAGAAGGTGCAACGAAATTAATTGA    857

BSNT_01880___    858 AGCACAAGTACAGGGAGCGAAAAACAATCTTGATGCAAACGTCATTGCCA    907
                     |||.|||||....||.||.|||||..||.|.||.||...|.||||.||.|
BPUM_1043___a    858 AGCGCAAGTTGCTGGTGCTAAAAATCATTTAGAAGCTGGCATCATAGCGA    907

BSNT_01880___    908 AAAAGATTGTCGGCTCAAATCTCGTGAAAACGGCAGTATACGGAACAGAT    957
                     |.||.||||||||.||||.|||.||||||||.||.||||||||.||.||.
BPUM_1043___a    908 AGAAAATTGTCGGTTCAAGTCTAGTGAAAACAGCCGTATACGGTACTGAC    957

BSNT_01880___    958 GCCAACTGGGGGCGGATCATCGGAGCCATTGGACACTCCGCAGC-----T   1002
                     |||||||||||.||||||||.|||||.|||||.||...||||||     |
BPUM_1043___a    958 GCCAACTGGGGACGGATCATTGGAGCGATTGGGCATAGCGCAGCATCCGT   1007

BSNT_01880___   1003 CAAGTGACGGCAGAAGAAGTAGAGGTTTATCTTGGCGGCCAATGCCTGTT   1052
                     ||   .||.||  ||||.|||||.||.|||.|.|||||.|||||.|||||
BPUM_1043___a   1008 CA---CACCGC--AAGAGGTAGAAGTGTATTTAGGCGGGCAATGTCTGTT   1052

BSNT_01880___   1053 TAAGAATAACGAGCCTCAGCCATTCTCTGAATCTCTCGCCAAGGAA----   1098
                     |||..||||.||.||.|||||.|||||.|||         .|||||    
BPUM_1043___a   1053 TAAACATAATGAACCACAGCCTTTCTCAGAA---------GAGGAAGCAA   1093

BSNT_01880___   1099 -----TACCTTGAAGGAGATGAAATCACCATTGTCA-TCAAGATGGATGA   1142
                          ||.||.|||...|||||.|||||.|||.|.| ||||     ||||
BPUM_1043___a   1094 AAGCGTATCTAGAACAGGATGAGATCACAATTTTGATTCAA-----ATGA   1138

BSNT_01880___   1143 AGGGGACGGAAACGG-GA--GAGCG---TGGGGCTGTGACCTGACCTATG   1186
                     |  .||.|||||.|| ||  .||||   ||||||||||||||.||.||||
BPUM_1043___a   1139 A--TGAGGGAAATGGTGAAGCAGCGGCATGGGGCTGTGACCTTACTTATG   1186

BSNT_01880___   1187 ACTATATCAAAATTAACGCGAGCTATCGCACGTAA   1221
                     |.|||.|.|||||||||||||||||||||||.|.|
BPUM_1043___a   1187 ATTATGTGAAAATTAACGCGAGCTATCGCACATGA   1221


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