Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01881 and BPUM_1044

See Amino acid alignment / Visit BSNT_01881 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_01881___argB.1.24716.seq
#    -bsequence dna-align/BPUM_1044___argB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01881___argB-BPUM_1044___argB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01881___argB-BPUM_1044___argB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01881___argB
# 2: BPUM_1044___argB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 815
# Identity:     538/815 (66.0%)
# Similarity:   538/815 (66.0%)
# Gaps:          76/815 ( 9.3%)
# Score: 1629.5
# 
#
#=======================================

BSNT_01881___      1 ATGAAGAAAACAATCGTTTTTAAATGCGGGGGAAGCGTCATCCGTGAGCT     50
                     |||.|.|||||.|||||.||.||.||.||.||.||.|||||.||.||.||
BPUM_1044___a      1 ATGGATAAAACGATCGTATTCAAGTGTGGAGGCAGTGTCATTCGAGAACT     50

BSNT_01881___     51 GTCGGAGGAATTTTTTCAAAATCTGAAAGAGCTGATGGCGTCAGGCTG--     98
                     .||.||....||||.|.|||||.|       |.|||..|.|||.||||  
BPUM_1044___a     51 TTCAGATACCTTTTATGAAAATGT-------CCGATCACTTCAAGCTGCT     93

BSNT_01881___     99 -----GAAGCTGGCGATCGTACATGGCGGGGGACCGGAAATCACGAATAT    143
                          .||||||||.|||||.|||||.||.||.||.|||||||||||.||
BPUM_1044___a     94 GGATTTAAGCTGGCTATCGTCCATGGTGGAGGTCCTGAAATCACGAACAT    143

BSNT_01881___    144 GCTGAAACGGTTAAATATCAAGACAGAGTTTTCGGGCGGACAGAGGAAAA    193
                     |||..||...|||.||.|.||.|||||.|||...|.|||||||.|.||||
BPUM_1044___a    144 GCTTCAAAAATTAGATGTAAAAACAGAATTTGTTGACGGACAGCGCAAAA    193

BSNT_01881___    194 CAACGAAGCCGGTGCTGGAAGTGGCGGAAATGGTTTTATCCGGTTCTGTC    243
                     ||||.|||||.||..|.||.||.||.||||||||..|.||.||..|.|||
BPUM_1044___a    194 CAACAAAGCCAGTATTAGAGGTAGCCGAAATGGTCCTTTCGGGCACGGTC    243

BSNT_01881___    244 AATAAATTTTTCGTTGCTGAGCTTGCCAAACACGGACTGCGAGCCGCAGG    293
                     |||||||..||.||..|.|||||.||.||.||.|...|...|.|.|..||
BPUM_1044___a    244 AATAAATACTTTGTATCAGAGCTCGCAAAGCATGATATCTCATCTGTCGG    293

BSNT_01881___    294 CATTTCTGGTAAGGATGG--AGGT-CTTTTGGAGGCTGATTATCTAGATC    340
                     ..|.|||||.||.|||||  ||.| |||   |..|||||||.|||.||||
BPUM_1044___a    294 TGTGTCTGGGAAAGATGGGCAGATGCTT---GTCGCTGATTTTCTTGATC    340

BSNT_01881___    341 CGGAAACAC----ACGGAGAAGTGGGAGAAATCAAAAAAGTCGATGCGTC    386
                         ||.||    ||||..|.||.||.|||||||||.|||    |||.||
BPUM_1044___a    341 ----AAGACGTGTACGGGTACGTTGGTGAAATCAAAGAAG----TGCATC    382

BSNT_01881___    387 C----ATGG-TGAACGCGCTGATGGAAAATGGCA--TCATCCCAGTTATT    429
                     |    |||| .||| ||..|.||||||||  .||  |.||.||.||.|||
BPUM_1044___a    383 CAGAGATGGCAGAA-GCATTAATGGAAAA--ACAGTTTATTCCTGTGATT    429

BSNT_01881___    430 GCGCCGCTGTCTATGACAAGCGACTGCAAAACGCTGAATGTAAATGCTGA    479
                     ||.|||.|||||||||||...||.|||.|||||.|.||.|||||.|||||
BPUM_1044___a    430 GCACCGTTGTCTATGACAGAAGAATGCCAAACGTTAAACGTAAACGCTGA    479

BSNT_01881___    480 TCTGGCTGCTTCAGCAGTCGCCGGAGCGCTTGAAGCTGATAAGCTGATGT    529
                     |.|.||.||.|||||.||.||.||||||.|..|||||||||||||.||||
BPUM_1044___a    480 TTTAGCAGCATCAGCTGTTGCAGGAGCGATGAAAGCTGATAAGCTCATGT    529

BSNT_01881___    530 TCGTCACGGATGTCGATGGAATCATGAAGGAAAAGCAGCGT------CTG    573
                     |.||.||.|||||.||.||.||..|.||  |||.|    ||      .|.
BPUM_1044___a    530 TTGTAACAGATGTGGAAGGCATTTTAAA--AAATG----GTGAATTATTA    573

BSNT_01881___    574 GACGTCCTGACCCCTAAGGAGATTCAGATGCT-----GATCAAGCAGGAA    618
                     ||.|||.|.|||        ||...|||.|||     |.|||...|.|||
BPUM_1044___a    574 GATGTCGTCACC--------GAACAAGAAGCTCTTACGCTCATTGATGAA    615

BSNT_01881___    619 G---TGATCACAGGAGGGATGA-TCCCGAAGGTCAATTCAGCCTTGTCAG    664
                     |   |.||..|.||.||.|||| |||..|||.|||| ||.||.|||...|
BPUM_1044___a    616 GGCATTATTTCCGGGGGAATGATTCCAAAAGTTCAA-TCCGCTTTGAGTG    664

BSNT_01881___    665 CTTTATCAGATCAGGTGTCTGAAGTCATGATCGTAAACGGAAAAGGATCA    714
                     |||||||||...|.|||..|||||||||||||||.||.||.|||||  ||
BPUM_1044___a    665 CTTTATCAGGAGATGTGGATGAAGTCATGATCGTGAATGGCAAAGG--CA    712

BSNT_01881___    715 --TTCTTCGCAGAACAAACCTTTCAGGGGACAAAAATCGTCAAAGCAAAG    762
                       .||||..|||...||||||||.|.||.||||.|||.||.||.|.||||
BPUM_1044___a    713 GTATCTTTACAGGGGAAACCTTTAAAGGAACAAGAATTGTGAAGGAAAAG    762

BSNT_01881___    763 GAGGCTGTTTCATGA    777
                     |||||.||....|||
BPUM_1044___a    763 GAGGCGGTCCTGTGA    777


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_01881 and BPUM_1044

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
