Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01882 and BPUM_1045

See Amino acid alignment / Visit BSNT_01882 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_01882___argD.1.24716.seq
#    -bsequence dna-align/BPUM_1045___argD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01882___argD-BPUM_1045___argD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01882___argD-BPUM_1045___argD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01882___argD
# 2: BPUM_1045___argD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1223
# Identity:     812/1223 (66.4%)
# Similarity:   812/1223 (66.4%)
# Gaps:         136/1223 (11.1%)
# Score: 2478.0
# 
#
#=======================================

BSNT_01882___      1 ATGAG-CAGCTTGTTTCAAACCTACGGCCGTTGGGATATTGACCTCAAAA     49
                     .|||| ||.| |.||||||||.||.||.||.|||.||.||||..|.|||.
BPUM_1045___a      1 GTGAGTCATC-TCTTTCAAACATATGGACGGTGGAATGTTGAAATTAAAG     49

BSNT_01882___     50 AAGCAAAGGGAACGTACGTTGAG-----GATCAAAACGGCAAATCATACC     94
                     |.|||    |.|.||.| |||.|     |||..|||.||.|||..|||..
BPUM_1045___a     50 AGGCA----GCAGGTTC-TTGGGCAGTCGATACAAATGGGAAAAAATATT     94

BSNT_01882___     95 TTGATTTCATTCAGGGGATTGCGGTATCAAATCTAGGACACTGCCATGAA    144
                     |.||.||.||.||.||.||.||.||..|||||||.||.|||       ||
BPUM_1045___a     95 TAGACTTTATCCAAGGCATAGCAGTCACAAATCTCGGTCAC-------AA    137

BSNT_01882___    145 GC-------GGTGA--CAGAGGCAGTCAAAAAACAGCTTGA-CAGCGTAT    184
                     .|       |||.|  || ||.|| ||||.||||||||||| || .||||
BPUM_1045___a    138 TCACCCAAAGGTCAATCA-AGCCA-TCAAGAAACAGCTTGATCA-TGTAT    184

BSNT_01882___    185 GGCACGTATCTAACCTGTTTCAAAACAGTCTCCAAGAGCAAGCGGCGCAG    234
                     ||||.|||||.||..|.|||.||||..|.||.|||||..||||.||..|.
BPUM_1045___a    185 GGCATGTATCGAATTTATTTGAAAATGGACTGCAAGAAAAAGCAGCAGAA    234

BSNT_01882___    235 AAGCTGGCAGCGCATAGTGCAGGAGATCTTGTCTTTTTCTGCAACAGCGG    284
                     ||.|||||.||..|.|||.||||.|||||.||.||||||||.||.|||||
BPUM_1045___a    235 AAACTGGCTGCAAACAGTTCAGGGGATCTCGTGTTTTTCTGTAATAGCGG    284

BSNT_01882___    285 CGCAGAGGCGAATGAAGGTGCGATAAAGCTTGCCCGAAAAGCAACTGGAA    334
                     .||.|||||.||||||||||||||.||..|.||.||.||||||||.||||
BPUM_1045___a    285 AGCTGAGGCAAATGAAGGTGCGATCAAATTAGCACGTAAAGCAACAGGAA    334

BSNT_01882___    335 AAACAAAAATCATCACTTTTCTTCAGTCGTTCCATGGCCGCACGTATGCA    384
                     |||||||.|||.|.||.|||.|.||.||.||.|||||.|||||||||||.
BPUM_1045___a    335 AAACAAATATCGTGACATTTTTGCACTCTTTTCATGGGCGCACGTATGCT    384

BSNT_01882___    385 GGGATGGCTGCGACCGGACAGGATAAAATCAAAACAGGCTTCGGCCCGAT    434
                     ||.||||||||.||.||.||.||||||||.|||||.||.||.||.||.||
BPUM_1045___a    385 GGTATGGCTGCTACAGGTCAAGATAAAATTAAAACGGGTTTTGGTCCTAT    434

BSNT_01882___    435 GCTTGAAGGCTTTCACTACCTGCCATACAATGATCCTTCTGCTTTTA-AA    483
                     |||.|||||||||||.||..|.||.|.|||||||||          | ||
BPUM_1045___a    435 GCTGGAAGGCTTTCATTATGTACCGTTCAATGATCC----------AGAA    474

BSNT_01882___    484 GCTCTTG------GGGAGGAAGGCGATATTGCCGCGGTGATGCTTGAAAC    527
                     ||..|||      |.||.|..||..||.|.||.|||||||||||.|||..
BPUM_1045___a    475 GCGATTGCCGCATGTGAAGTCGGTAATGTGGCAGCGGTGATGCTCGAAGT    524

BSNT_01882___    528 AGTGCAGGGAGAAGGAGGAGTCAATCCGGCGAGTGCTGAATTTTTATCAG    577
                     .||||||||||||||.||.||||||||.||.|...|.||||||.||..||
BPUM_1045___a    525 TGTGCAGGGAGAAGGTGGCGTCAATCCAGCAACAACAGAATTTCTAGAAG    574

BSNT_01882___    578 CCGTACAGTCGTTTTGCAAGGAAAAGC---AAGCCCTTCTCATCATTGAT    624
                     ||||.||..||||||||   .||||||   ||||.||.||.|||.|.|||
BPUM_1045___a    575 CCGTTCAAGCGTTTTGC---CAAAAGCATGAAGCACTGCTGATCGTAGAT    621

BSNT_01882___    625 GAAATCCAGACCGGCATCGGACGGACGGGAAAAGGCTTCGCATATGAGCA    674
                     ||.||.||.||.||.||.|||||.||.||||.||..||.|||||.||.||
BPUM_1045___a    622 GAGATTCAAACGGGTATAGGACGTACAGGAACAGCATTTGCATACGAACA    671

BSNT_01882___    675 CTTCGGACTCTCA-CCGGATATCATCACAGTC-GCCAAAGGATTGGGAAA    722
                     ....||||| |.| ||.|||||.|||.| .|| ||.||||||||.|||||
BPUM_1045___a    672 AACGGGACT-TGATCCTGATATTATCTC-TTCTGCAAAAGGATTAGGAAA    719

BSNT_01882___    723 CGGCTTTCCGGTCGGCGCTGTCATTGGAAAAAAACAGC--TTGGAGAAGC    770
                     .|||||.||.||.||.||.|||||.||.|||||  .||  |.|||||.||
BPUM_1045___a    720 TGGCTTCCCAGTTGGTGCAGTCATCGGGAAAAA--GGCATTAGGAGACGC    767

BSNT_01882___    771 GTTTACCCCTGGTTCTCACGGAACGACTTTCGGAGGAAATATGCTGGCGA    820
                     .||..|.||.|||||.||||||||.||.|||||.||.||.|||||.||.|
BPUM_1045___a    768 ATTCTCACCAGGTTCACACGGAACAACCTTCGGTGGTAACATGCTTGCCA    817

BSNT_01882___    821 TGGCTGCTGTGAATGCCACATTGCAAATTG-TATTCCAGCCTGACTTTTT    869
                     ||||.||.||||||||.|||.| |.|..|| |.|||.|...|||.|||.|
BPUM_1045___a    818 TGGCCGCAGTGAATGCAACACT-CGATGTGATTTTCAAAGATGAGTTTCT    866

BSNT_01882___    870 GCAAGAGGCTG-CTGATAAAGGGGCGTTTTTAAAAGAACAGCTTGAGGC-    917
                     |..|||.| || ..||.|||||.||.|.|.||..||||.||||    || 
BPUM_1045___a    867 GACAGAAG-TGAAAGAAAAAGGCGCTTATCTACTAGAAAAGCT----GCA    911

BSNT_01882___    918 GGAGCTAAA------GAGCCCTTTTGTTAAACAAATCCGAGGTAAAGGAT    961
                     .||.|||||      ||   .|.|.||.|||.||.|.||.||.|||||||
BPUM_1045___a    912 AGATCTAAAACAACTGA---ATATCGTAAAAGAAGTACGCGGAAAAGGAT    958

BSNT_01882___    962 TAATGCTTGGAATTGAGTGTGATGGCCCGGTTGCTGACATTATTGCTGAA   1011
                     |.|||...||..||||.|||.||...||.||  |.|..|||||      |
BPUM_1045___a    959 TGATGGCAGGGGTTGAATGTCATCAGCCAGT--CGGGGATTAT------A   1000

BSNT_01882___   1012 TTGCAG----------ACATTAGGCTTGCTTGTATTGCCGGCCGGCCCGA   1051
                     |..|||          |||  |||.|||||.|||.|.||.||.||.||.|
BPUM_1045___a   1001 TCACAGCCCTAAGAGAACA--AGGATTGCTAGTACTTCCAGCTGGTCCAA   1048

BSNT_01882___   1052 ACGTGATTCGGCTGCTGCCGCCGCTCACCGT-GACTAAGGATGAAATAGC   1100
                     |.|||||||||.|..||||.|||||.|..|| ||..|||.| ||||||| 
BPUM_1045___a   1049 ATGTGATTCGGTTATTGCCTCCGCTGAATGTAGAAAAAGCA-GAAATAG-   1096

BSNT_01882___   1101 AGAAGCCGTCAGCAAGCTGAAACAGGCAATCGCTCA-TCA---TTCCGC-   1145
                               |.||||| ||.|.|.|    ||||.| |||   ||..|| 
BPUM_1045___a   1097 ----------ATCAAGC-GATAGATG----CGCTAACTCAGGTTTTAGCA   1131

BSNT_01882___   1146 --TGTAAACCAGTGA--------   1158
                       ||  ||.||||||        
BPUM_1045___a   1132 AATG--AAACAGTGACGGTATAA   1152


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