Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01885 and BPUM_1048

See Amino acid alignment / Visit BSNT_01885 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:24
# Commandline: needle
#    -asequence dna-align/BSNT_01885___argF.1.24716.seq
#    -bsequence dna-align/BPUM_1048___argF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01885___argF-BPUM_1048___argF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01885___argF-BPUM_1048___argF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01885___argF
# 2: BPUM_1048___argF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1011
# Identity:     686/1011 (67.9%)
# Similarity:   686/1011 (67.9%)
# Gaps:         111/1011 (11.0%)
# Score: 2237.0
# 
#
#=======================================

BSNT_01885___      1 ATG---CACACAG-TGAC--GCAAACCAGTTTATACGGAAAAGATTTATT     44
                     |||   ||   || ||||  ||||.|.|..||||||||||||||.||.||
BPUM_1048___a      1 ATGAGTCA---AGTTGACCTGCAACCGACATTATACGGAAAAGACTTTTT     47

BSNT_01885___     45 AACGTTAAAGGACCTTAGTGAAGAGGATATAAACG-CCTTGC--------     85
                     |.|.|||||.||  ||..|.|       ||.||.| |.||||        
BPUM_1048___a     48 ATCATTAAAAGA--TTTCTCA-------ATCAATGACATTGCTTATTTAA     88

BSNT_01885___     86 TCGCAGAAGCCGGTGAGCTGAAACAAAA-------CAAAATTCAGCCTAT    128
                     |.|.|.||||.|..||..||||||||||       |||.|||       |
BPUM_1048___a     89 TTGAAAAAGCAGAAGAAATGAAACAAAACCCATACCAAGATT-------T    131

BSNT_01885___    129 ATTCCATGGCAAAACCTTGGCGATGATTTTTGAAAAATCATCAACGCGGA    178
                     ||||.|.||.|||||.||.||||||||||||||||||||.||||||.|.|
BPUM_1048___a    132 ATTCAAAGGGAAAACGTTAGCGATGATTTTTGAAAAATCGTCAACGAGAA    181

BSNT_01885___    179 CACGTGTTTCTTTTGAAGCGGGCATGGCACAGCTTGGCGGGA-ACGCCCT    227
                     |.|||||.||.|||||||||||.|||.|.|||||||| |||| |.||.||
BPUM_1048___a    182 CCCGTGTATCATTTGAAGCGGGAATGACGCAGCTTGG-GGGACATGCGCT    230

BSNT_01885___    228 CTTTCTAAGC-CAGAAAGATCTGCAGCTGGGGCGCGGTGAGACTGTCGCT    276
                     |||.||.||| || ||.|||.||||..|.||..|.||.||.||..||..|
BPUM_1048___a    231 CTTCCTCAGCTCA-AATGATTTGCAAATCGGCAGAGGAGAAACAATCAGT    279

BSNT_01885___    277 GATACGGCAAAAGTGCTGTCAGGCTATGTGGATGCCATCATGATCCGGAC    326
                     |||||.||..|.|||||.||.||||||||.||.|.|||.|||||.||.||
BPUM_1048___a    280 GATACAGCGCAGGTGCTATCTGGCTATGTAGACGGCATTATGATTCGAAC    329

BSNT_01885___    327 CTTTGAACATGAAAAGGTGGAGGAACTTGCCAAAGAAGCTGACATTCCGG    376
                     ||||||||||||.|||||.|||||.||.||..||.|.||...||||||.|
BPUM_1048___a    330 CTTTGAACATGAGAAGGTCGAGGAGCTGGCACAATATGCGTCCATTCCTG    379

BSNT_01885___    377 TGATCAATGGACTTACTGATAAATACCACCCATGCCAGGCGCTGGCGGAT    426
                     |.|||||||||||.|||||..|.|.|||||||||||||||.||.||.|||
BPUM_1048___a    380 TCATCAATGGACTGACTGACTACTCCCACCCATGCCAGGCACTTGCAGAT    429

BSNT_01885___    427 CTCTTGACGATTAAGGAGATAAAAGGGAAGCTT-AAAGGCGTAAAAGTCT    475
                     .|.||||||||.||.|| |..|||.||||..|| |||||..|.||||||.
BPUM_1048___a    430 TTATTGACGATAAAAGA-AGCAAAAGGAACATTAAAAGGAATCAAAGTCG    478

BSNT_01885___    476 CATACATCGGTGACGGAAATAACGTGGCGCACTCCTTGATGATCGGCTGC    525
                     |.||||||||||||||||||||.||.||.||||||||||||.|.|||||.
BPUM_1048___a    479 CTTACATCGGTGACGGAAATAATGTAGCTCACTCCTTGATGGTTGGCTGT    528

BSNT_01885___    526 GCGAAAATGGGCTGTGATATCTCGATCGCTTCGCCAAAGGGATATGAAGT    575
                     ||..|..|.|||||||||||..|..|.||.||.|||||.||.||||||..
BPUM_1048___a    529 GCACAGTTAGGCTGTGATATTGCAGTTGCATCACCAAAAGGCTATGAACC    578

BSNT_01885___    576 GTTAGATGAAGCAGCTGAAGCGGCAAAAACA----TATGCACTTCAATCC    621
                     ..|..|.||||.|.|.||..|.||    |||    |.||||...|||||.
BPUM_1048___a    579 ACTTCAAGAAGTAACAGACACAGC----ACATGAGTTTGCAAAACAATCA    624

BSNT_01885___    622 GGCTC-----TTCTATCACGCTGACAGATGATCCGATTGAAGCTGTAAAA    666
                     |||.|     |  ||||   .|.|||...||.||..|||..|||||..||
BPUM_1048___a    625 GGCGCAGAAGT--TATC---GTTACAACAGACCCTGTTGCTGCTGTTCAA    669

BSNT_01885___    667 GACGCGGACGTAATTTATTCTGATGTGTTTACAAGCATGGGGCAGGAAGC    716
                     .|.||.||.||.||||||||.|||||.||||||||.||||||||||||||
BPUM_1048___a    670 AATGCAGATGTCATTTATTCCGATGTATTTACAAGTATGGGGCAGGAAGC    719

BSNT_01885___    717 GGA---AGAGCAAGAACGTCTTGCTGTCTTTGCGCCTTATCAGGTGAATG    763
                     .||   ||||   .||||||||||||..|||......|||||..|.||||
BPUM_1048___a    720 AGAAACAGAG---AAACGTCTTGCTGAATTTAAAGAATATCAAATCAATG    766

BSNT_01885___    764 CGGCGCTTGTCAGCCATGCCAAGC--CTGACTATACATTTT--TACATTG    809
                     ..|..||..|..|.|||||  |||  ..||.|||  |||||  |.|||||
BPUM_1048___a    767 ATGAACTAATGCGTCATGC--AGCAAAAGATTAT--ATTTTCCTTCATTG    812

BSNT_01885___    810 TCTCCCTGCGCATCGTGAGGAAGAAGTGACTGCGGAGATTATTGACGGGC    859
                     ||||||.||.||.||.|..|||||||||||.||.||.|||||||||||.|
BPUM_1048___a    813 TCTCCCAGCACACCGCGGAGAAGAAGTGACAGCAGACATTATTGACGGAC    862

BSNT_01885___    860 CGAACTCTGCAGTGTTCCAGCAGGCGGAAAACCGTCTTCATGTGCAAAAA    909
                     ||.||||...|||.||.||.|||||.|||||||||||.|||||.||||||
BPUM_1048___a    863 CGCACTCAAAAGTATTTCAACAGGCAGAAAACCGTCTGCATGTACAAAAA    912

BSNT_01885___    910 GCACTGCTGAAGGCCATTTTATACAAAGGG---------GAATCATC-AA    949
                     |||               |||..|||||.|         .||.|||| ||
BPUM_1048___a    913 GCA---------------TTAATCAAAGAGCTCATGTATCAACCATCTAA    947

BSNT_01885___    950 AAAACTGCTGA    960
                     |.||       
BPUM_1048___a    948 ATAA-------    951


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